Ontology meeting 2022-12-05: Difference between revisions
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(Created page with "* '''Group members:''' Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul * '''Present:''' * '''Regrets: ''' =Editors discussion items= ==Differentiation:== * Pascale & David have proposed new definitions for 'cell differentiation' and main children (cell development, cell fate specification, cell fate determination, etc), see https://github.com/geneontology/go-ontology/issues/24390 * We'd like to discuss these and get feedb...") |
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=Editors discussion items= | =Editors discussion items= | ||
==Differentiation:== | ==Discussions arising from DP work== | ||
===Differentiation:=== | |||
* Pascale & David have proposed new definitions for 'cell differentiation' and main children (cell development, cell fate specification, cell fate determination, etc), see https://github.com/geneontology/go-ontology/issues/24390 | * Pascale & David have proposed new definitions for 'cell differentiation' and main children (cell development, cell fate specification, cell fate determination, etc), see https://github.com/geneontology/go-ontology/issues/24390 | ||
* We'd like to discuss these and get feedback from groups annotating development papers in various species | * We'd like to discuss these and get feedback from groups annotating development papers in various species | ||
===Cellular component Assembly=== | |||
* AI: query genes annotated to both assembly of a complex and part of the same complex. | |||
* AI: improve definition to clarify that the annotated genes must mediate the process, not just be a structural constituent | |||
==Discussions arising from BP refactoring== | |||
===homeostasis at the organism level in multicellular organisms=== | |||
* 'Circulating levels' used in animals; does that make sense in pants? Tanya -> no | |||
* suggestions (by email): | |||
** intra organismal x homeostasis | |||
** intra multicellular organismal x homeostasis | |||
** organismal x homeostasis (+ restriction of do not annotate single celled organisms) | |||
=Tickets by ontology editors= | =Tickets by ontology editors= |
Revision as of 05:22, 24 November 2022
- Group members: Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
- Present:
- Regrets:
Editors discussion items
Discussions arising from DP work
Differentiation:
- Pascale & David have proposed new definitions for 'cell differentiation' and main children (cell development, cell fate specification, cell fate determination, etc), see https://github.com/geneontology/go-ontology/issues/24390
- We'd like to discuss these and get feedback from groups annotating development papers in various species
Cellular component Assembly
- AI: query genes annotated to both assembly of a complex and part of the same complex.
- AI: improve definition to clarify that the annotated genes must mediate the process, not just be a structural constituent
Discussions arising from BP refactoring
homeostasis at the organism level in multicellular organisms
- 'Circulating levels' used in animals; does that make sense in pants? Tanya -> no
- suggestions (by email):
- intra organismal x homeostasis
- intra multicellular organismal x homeostasis
- organismal x homeostasis (+ restriction of do not annotate single celled organisms)