Ontology meeting 2022-12-05: Difference between revisions

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(Created page with "* '''Group members:''' Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul * '''Present:''' * '''Regrets: ''' =Editors discussion items= ==Differentiation:== * Pascale & David have proposed new definitions for 'cell differentiation' and main children (cell development, cell fate specification, cell fate determination, etc), see https://github.com/geneontology/go-ontology/issues/24390 * We'd like to discuss these and get feedb...")
 
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=Editors discussion items=
=Editors discussion items=


==Differentiation:==
==Discussions arising from DP work==
===Differentiation:===
* Pascale & David have proposed new definitions for 'cell differentiation' and main children (cell development, cell fate specification, cell fate determination, etc), see https://github.com/geneontology/go-ontology/issues/24390
* Pascale & David have proposed new definitions for 'cell differentiation' and main children (cell development, cell fate specification, cell fate determination, etc), see https://github.com/geneontology/go-ontology/issues/24390
* We'd like to discuss these and get feedback from groups annotating development papers in various species
* We'd like to discuss these and get feedback from groups annotating development papers in various species
===Cellular component Assembly===
* AI: query genes annotated to both assembly of a complex and part of the same complex.
* AI: improve definition to clarify that the annotated genes must mediate the process, not just be a structural constituent
==Discussions arising from BP refactoring==
===homeostasis at the organism level in multicellular organisms===
* 'Circulating levels' used in animals; does that make sense in pants? Tanya -> no
* suggestions (by email):
** intra organismal x homeostasis
**  intra multicellular organismal x homeostasis
**  organismal x homeostasis (+ restriction of do not annotate single celled organisms)


=Tickets by ontology editors=
=Tickets by ontology editors=

Revision as of 05:22, 24 November 2022

  • Group members: Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
  • Present:
  • Regrets:

Editors discussion items

Discussions arising from DP work

Differentiation:

  • Pascale & David have proposed new definitions for 'cell differentiation' and main children (cell development, cell fate specification, cell fate determination, etc), see https://github.com/geneontology/go-ontology/issues/24390
  • We'd like to discuss these and get feedback from groups annotating development papers in various species


Cellular component Assembly

  • AI: query genes annotated to both assembly of a complex and part of the same complex.
  • AI: improve definition to clarify that the annotated genes must mediate the process, not just be a structural constituent

Discussions arising from BP refactoring

homeostasis at the organism level in multicellular organisms

  • 'Circulating levels' used in animals; does that make sense in pants? Tanya -> no
  • suggestions (by email):
    • intra organismal x homeostasis
    • intra multicellular organismal x homeostasis
    • organismal x homeostasis (+ restriction of do not annotate single celled organisms)

Tickets by ontology editors