Ontology meeting 2023-01-09: Difference between revisions
(Created page with "* '''Group members:''' Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul * '''Present:''' * '''Regrets: ''' =Announcements= Next week is MLK's Day, there is no ontology call. =New file= * src/ontology/imports/go-catalytic-activities-participants.owl Need to edit the file when obsoleting MFs that are part of this file - see for example: https://github.com/geneontology/go-ontology/pull/24613/commits/a8f04973219e91f7742bf2...") |
mNo edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
* '''Group members:''' Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul | * '''Group members:''' Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul | ||
* '''Present:''' | * '''Present:''' Pascale, Harold, Raymond, Val, Edith, Jim, Tanya, Karen, Kimberly, David, Chris, | ||
* '''Regrets: ''' | * '''Regrets: ''' Peter, Paul | ||
Line 7: | Line 7: | ||
Next week is MLK's Day, there is no ontology call. | Next week is MLK's Day, there is no ontology call. | ||
=New file= | ==Set up a jamboree== | ||
Ticket closing sprint - next week ? Week after? | |||
=Editors discussion items= | |||
==Is hormone secretion intended only for endocrine, or includes other types== | |||
https://github.com/geneontology/go-ontology/issues/17084 | |||
Question by David OS: | |||
Hi @raymond91125 Once GO PR is merged with the general term - the next question is, will GO is happy to add endocrine hormone secretion terms for specific endocrine hormones. IF so, CL can provide a list of the ones we need. We'd prefer this solution, but if not, just let us know and we'll handle the formalisation on our side. | |||
==Using GOCHE roles== | |||
See https://github.com/geneontology/go-ontology/pull/24473 | |||
==New file for some MF terms== | |||
* src/ontology/imports/go-catalytic-activities-participants.owl | * src/ontology/imports/go-catalytic-activities-participants.owl | ||
Need to edit the file when obsoleting MFs that are part of this file - see for example: https://github.com/geneontology/go-ontology/pull/24613/commits/a8f04973219e91f7742bf2df8c84655305f65701 | Need to edit the file when obsoleting MFs that are part of this file - see for example: https://github.com/geneontology/go-ontology/pull/24613/commits/a8f04973219e91f7742bf2df8c84655305f65701 | ||
==Consider moving taxon constraints back into ontology== | |||
Jim, See https://github.com/geneontology/go-ontology/issues/24490 | |||
==Bulk updates== | |||
===Adding MetaCyc xrefs in the ontology=== | |||
https://github.com/geneontology/go-ontology/issues/24597 | |||
===Obsoleting large sets of terms=== | |||
====Obsolete BPs "regulation MF"==== | |||
https://github.com/geneontology/go-ontology/projects/34?add_cards_query=is%3Aopen | |||
=Tickets by ontology editors= | =Tickets by ontology editors= |
Latest revision as of 03:09, 10 January 2023
- Group members: Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
- Present: Pascale, Harold, Raymond, Val, Edith, Jim, Tanya, Karen, Kimberly, David, Chris,
- Regrets: Peter, Paul
Announcements
Next week is MLK's Day, there is no ontology call.
Set up a jamboree
Ticket closing sprint - next week ? Week after?
Editors discussion items
Is hormone secretion intended only for endocrine, or includes other types
https://github.com/geneontology/go-ontology/issues/17084 Question by David OS: Hi @raymond91125 Once GO PR is merged with the general term - the next question is, will GO is happy to add endocrine hormone secretion terms for specific endocrine hormones. IF so, CL can provide a list of the ones we need. We'd prefer this solution, but if not, just let us know and we'll handle the formalisation on our side.
Using GOCHE roles
See https://github.com/geneontology/go-ontology/pull/24473
New file for some MF terms
- src/ontology/imports/go-catalytic-activities-participants.owl
Need to edit the file when obsoleting MFs that are part of this file - see for example: https://github.com/geneontology/go-ontology/pull/24613/commits/a8f04973219e91f7742bf2df8c84655305f65701
Consider moving taxon constraints back into ontology
Jim, See https://github.com/geneontology/go-ontology/issues/24490
Bulk updates
Adding MetaCyc xrefs in the ontology
https://github.com/geneontology/go-ontology/issues/24597
Obsoleting large sets of terms
Obsolete BPs "regulation MF"
https://github.com/geneontology/go-ontology/projects/34?add_cards_query=is%3Aopen