Ontology meeting 2023-01-09: Difference between revisions

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* '''Group members:''' Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
* '''Group members:''' Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
* '''Present:'''  
* '''Present:'''   Pascale, Harold, Raymond, Val, Edith, Jim, Tanya, Karen, Kimberly, David, Chris,
* '''Regrets: '''  
* '''Regrets: ''' Peter, Paul




=Announcements=
=Announcements=
Next week is MLK's Day, there is no ontology call.  
Next week is MLK's Day, there is no ontology call.  
==Set up a jamboree==
Ticket closing sprint - next week ? Week after?


=Editors discussion items=
=Editors discussion items=
==Is hormone secretion intended only for endocrine, or includes other types==
https://github.com/geneontology/go-ontology/issues/17084
Question by David OS:
Hi @raymond91125 Once GO PR is merged with the general term - the next question is, will GO is happy to add endocrine hormone secretion terms for specific endocrine hormones. IF so, CL can provide a list of the ones we need. We'd prefer this solution, but if not, just let us know and we'll handle the formalisation on our side.
==Using GOCHE roles==
See https://github.com/geneontology/go-ontology/pull/24473


==New file for some MF terms==  
==New file for some MF terms==  

Latest revision as of 03:09, 10 January 2023

  • Group members: Pascale, Harold, Raymond, Val, Edith, Peter, Jim, Tanya, Karen, Kimberly, David, Chris, Paul
  • Present: Pascale, Harold, Raymond, Val, Edith, Jim, Tanya, Karen, Kimberly, David, Chris,
  • Regrets: Peter, Paul


Announcements

Next week is MLK's Day, there is no ontology call.

Set up a jamboree

Ticket closing sprint - next week ? Week after?

Editors discussion items

Is hormone secretion intended only for endocrine, or includes other types

https://github.com/geneontology/go-ontology/issues/17084 Question by David OS: Hi @raymond91125 Once GO PR is merged with the general term - the next question is, will GO is happy to add endocrine hormone secretion terms for specific endocrine hormones. IF so, CL can provide a list of the ones we need. We'd prefer this solution, but if not, just let us know and we'll handle the formalisation on our side.

Using GOCHE roles

See https://github.com/geneontology/go-ontology/pull/24473

New file for some MF terms

  • src/ontology/imports/go-catalytic-activities-participants.owl

Need to edit the file when obsoleting MFs that are part of this file - see for example: https://github.com/geneontology/go-ontology/pull/24613/commits/a8f04973219e91f7742bf2df8c84655305f65701

Consider moving taxon constraints back into ontology

Jim, See https://github.com/geneontology/go-ontology/issues/24490

Bulk updates

Adding MetaCyc xrefs in the ontology

https://github.com/geneontology/go-ontology/issues/24597

Obsoleting large sets of terms

Obsolete BPs "regulation MF"

https://github.com/geneontology/go-ontology/projects/34?add_cards_query=is%3Aopen


Tickets by ontology editors