Ontology meeting 2023-01-30: Difference between revisions
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=Script to download annotations= | =Script to download annotations= | ||
https://github.com/geneontology/simple-report-system | https://github.com/geneontology/simple-report-system | ||
# Create New issue | |||
# Paste GO term(s) (1 or many) | |||
# Select report using the labels: | |||
#* "direct_ann_to_list_of_terms": all direct EXP annotations to the terms entered | |||
#* "reg_ann_to_list_of_terms": all EXP annotations to the term entered, plus all children (including regulates children) | |||
==Update missing MetaCyc2GO mappings for SGD YeastPathways== | ==Update missing MetaCyc2GO mappings for SGD YeastPathways== | ||
Jim, Chris | Jim, Chris | ||
Revision as of 04:12, 30 January 2023
Announcements
Annotation reviews at MGI
- Li (@LiNiMGI) will be replacing Harold for annotation tickets review.
- The group-contacts.csv file has been updated:
https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv
GOC consortium
- April 27th-29th, Padua, Italy
- If you plan to attend, please register ASAP.
geneontology.ticketleap.com/goc2023
password: goc2023
Editors discussion items
Script to download annotations
https://github.com/geneontology/simple-report-system
- Create New issue
- Paste GO term(s) (1 or many)
- Select report using the labels:
- "direct_ann_to_list_of_terms": all direct EXP annotations to the terms entered
- "reg_ann_to_list_of_terms": all EXP annotations to the term entered, plus all children (including regulates children)
Update missing MetaCyc2GO mappings for SGD YeastPathways
Jim, Chris https://github.com/geneontology/go-ontology/issues/24597
Bulk updates
Obsoleting large sets of terms
Obsolete BPs "regulation MF"
https://github.com/geneontology/go-ontology/projects/34?add_cards_query=is%3Aopen