Ontology meeting 2023-01-30: Difference between revisions
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# Navigate to the [https://github.com/geneontology/simple-report-system/tree/main/reports reports] (can also go via the [https://github.com/geneontology/simple-report-system simple-report-system link] at the top | # Navigate to the [https://github.com/geneontology/simple-report-system/tree/main/reports reports] (can also go via the [https://github.com/geneontology/simple-report-system simple-report-system link] at the top | ||
# Select the report that corresponds to the ticket number | # Select the report that corresponds to the ticket number | ||
# Make a copy of the [https://docs.google.com/spreadsheets/d/ | # Make a copy of the [https://docs.google.com/spreadsheets/d/1z496xuif_6RrooHLW4kKl0ob-GiZ_JPc0qd7Vv19RyE/edit#gid=0 New Annotation Review Template] | ||
# Paste annotations | # Paste annotations | ||
# Sort by Assigned by, then by reference | # Sort by Assigned by, then by reference |
Revision as of 04:25, 30 January 2023
Announcements
Annotation reviews at MGI
- Li (@LiNiMGI) will be replacing Harold for annotation tickets review.
- The group-contacts.csv file has been updated:
https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv
GOC consortium
- April 27th-29th, Padua, Italy
- If you plan to attend, please register ASAP.
geneontology.ticketleap.com/goc2023
password: goc2023
Editors discussion items
Script to download annotations
https://github.com/geneontology/simple-report-system
- Create New issue
- Paste GO term(s) (1 or many)
- Select report using the labels:
- "direct_ann_to_list_of_terms": all direct EXP annotations to the terms entered
- "reg_ann_to_list_of_terms": all EXP annotations to the term entered, plus all children (including regulates children)
- Navigate to the reports (can also go via the simple-report-system link at the top
- Select the report that corresponds to the ticket number
- Make a copy of the New Annotation Review Template
- Paste annotations
- Sort by Assigned by, then by reference
Update missing MetaCyc2GO mappings for SGD YeastPathways
Jim, Chris https://github.com/geneontology/go-ontology/issues/24597
Bulk updates
Obsoleting large sets of terms
Obsolete BPs "regulation MF"
https://github.com/geneontology/go-ontology/projects/34?add_cards_query=is%3Aopen