Ontology meeting 2023-01-30

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Announcements

Annotation reviews at MGI

  • Li (@LiNiMGI) will be replacing Harold for annotation tickets review.
  • The group-contacts.csv file has been updated:

https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

GOC consortium

  • April 27th-29th, Padua, Italy
  • If you plan to attend, please register ASAP.

geneontology.ticketleap.com/goc2023

password: goc2023

Editors discussion items

Script to download annotations

https://github.com/geneontology/simple-report-system

  1. Create New issue
  2.  Paste GO term(s) (1 or many)
  3.  Select report using the labels:
    • "direct_ann_to_list_of_terms": all direct EXP annotations to the terms entered
    • "reg_ann_to_list_of_terms": all EXP annotations to the term entered, plus all children (including regulates children)
  4.  Navigate to the reports (can also go via the simple-report-system link at the top
  5.  Select the report that corresponds to the ticket number

Update missing MetaCyc2GO mappings for SGD YeastPathways

Jim, Chris https://github.com/geneontology/go-ontology/issues/24597

Bulk updates

Obsoleting large sets of terms

Obsolete BPs "regulation MF"

https://github.com/geneontology/go-ontology/projects/34?add_cards_query=is%3Aopen

Tickets by ontology editors