Ontology meeting 2023-07-03

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Group members: Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul
Present: Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris,
Regrets: Paul?

Announcements

Discussion points

Update on ontology maintenance project

https://github.com/orgs/geneontology/projects/135

Implement a system for keeping partonomies in sync

Regulation of neurotransmitter levels

Causes taxon constraints problems, see https://github.com/geneontology/go-ontology/issues/25594
- ^^ This issue doesn't seem to have anything to do with regulation of levels? Cjm (talk) 11:24, 10 July 2023 (EDT)
- See my analysis of roles: https://docs.google.com/document/d/1fZsIQJXGFULTXaGUOqQ_Bn4yEfauibAy07B3VPwmz8g/edit Cjm (talk) 11:14, 10 July 2023 (EDT)

Revert to using 'has input' and 'has output', instead of 'primary'?

See analysis here: https://docs.google.com/document/d/1uzdLc1YaQesXh-aSWyOxgD-lJzd5vRUSF4uLUle1Wts/edit All terms with 'input' 'or 'output' (primary or not): https://docs.google.com/spreadsheets/d/1x23v1ey67Ou_71bmWc3_-LpgMP2I8MU3/edit?usp=drive_web&ouid=116162935390241629304&rtpof=true

BP refactor: separate 'developmental process' and 'cellular developmental process'

See draft plan here: https://docs.google.com/document/d/1FafBfb44nAk-7PwUDj42XQLgwJYxPdq8ec4n-cWwKkg/edit#

Change 'anatomical structure maturation' to reference UBERON rather than CARO. https://github.com/geneontology/go-ontology/pull/25618
obsolete GO:0000904 'cell morphogenesis involved in differentiation' https://github.com/geneontology/go-ontology/issues/24299

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