Ontology meeting 2023-07-17
- Group members: Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul
- Present: Pascale, Raymond, Jim, Kimberly, Chris, Edith,Val Tanya, Paul
- Regrets:
Announcements
Discussion points
Update on ontology maintenance project
https://github.com/orgs/geneontology/projects/135
Further improving the efficiency of term obsoletion
These small tweeks: 1. When we create the annotation files, 4 files are not created and we need to look at them all to see if they have any contents. Is it possible to not create the file if there are no annotations? 2. We still need to create a lot of tickets for the obsoletion, and then do the e-mail. Can we think of any other ways to streamline further?
Revert to using 'has input' and 'has output', instead of 'primary'?
See analysis here: https://docs.google.com/document/d/1uzdLc1YaQesXh-aSWyOxgD-lJzd5vRUSF4uLUle1Wts/edit All terms with 'input' 'or 'output' (primary or not): https://docs.google.com/spreadsheets/d/1x23v1ey67Ou_71bmWc3_-LpgMP2I8MU3/edit?usp=drive_web&ouid=116162935390241629304&rtpof=true
BP refactor: separate 'developmental process' and 'cellular developmental process'
See draft plan here: https://docs.google.com/document/d/1FafBfb44nAk-7PwUDj42XQLgwJYxPdq8ec4n-cWwKkg/edit#
- Change 'anatomical structure maturation' to reference UBERON rather than CARO. https://github.com/geneontology/go-ontology/pull/25618
- obsolete GO:0000904 'cell morphogenesis involved in differentiation' https://github.com/geneontology/go-ontology/issues/24299