Ontology meeting 2023-07-24

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Group members: Pascale, Raymond, Val, Edith, Jim, Tanya, Kimberly, Peter, David, Chris, Paul
Present:
Regrets:

Announcements

Pascale away:

July 31
Aug 7 (no GO calls week)
Aug 14th

Discussion points

Update on ontology maintenance project

https://github.com/orgs/geneontology/projects/135

Further improving the efficiency of term obsoletion

These small tweeks:

When we create the annotation files, 4 files are not created and we need to look at them all to see if they have any contents. Is it possible to not create the file if there are no annotations?
TICKET CREATED IN ANNOUNCEMENT REPO - We still need to create a lot of tickets for the obsoletion, and then do the e-mail. Can we think of any other ways to streamline further?

GO:0000904 'cell morphogenesis involved in differentiation now obsoleted

https://github.com/geneontology/go-ontology/issues/24299
Can we now proceed with implementation of the automated inferences of part_of relations?

Revert to using 'has input' and 'has output', instead of 'primary'?

See analysis here: https://docs.google.com/document/d/1uzdLc1YaQesXh-aSWyOxgD-lJzd5vRUSF4uLUle1Wts/edit All terms with 'input' 'or 'output' (primary or not): https://docs.google.com/spreadsheets/d/1x23v1ey67Ou_71bmWc3_-LpgMP2I8MU3/edit?usp=drive_web&ouid=116162935390241629304&rtpof=true

BP refactor: separate 'developmental process' and 'cellular developmental process'

See draft plan here: https://docs.google.com/document/d/1FafBfb44nAk-7PwUDj42XQLgwJYxPdq8ec4n-cWwKkg/edit#

Change 'anatomical structure maturation' to reference UBERON rather than CARO. https://github.com/geneontology/go-ontology/pull/25618

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