Ontology workshop Jan 2013: Difference between revisions
Jump to navigation
Jump to search
(→Travel) |
(→Travel) |
||
Line 84: | Line 84: | ||
departing SFO on Tue. Jan. 29th at 9:10pm (UA8882). | departing SFO on Tue. Jan. 29th at 9:10pm (UA8882). | ||
Jane | |||
Jane: | |||
arriving SFO on Sat. Jan. 26th at 5.25pm (AA6190); | arriving SFO on Sat. Jan. 26th at 5.25pm (AA6190); | ||
departing SFO on Tue. Jan. 29th at 7.45pm (AA6189). | departing SFO on Tue. Jan. 29th at 7.45pm (AA6189). |
Revision as of 12:43, 10 January 2013
Dates: Sun Jan 27 - Tue Jan 29 of 2013 (*FINAL*)
Location: CA
Attendees:
- Chris (Local - LBL)
- Heiko (Local - LBL)
- Suzi (Local - LBL)
- Tanya (Local - Carnegie - guest pass & parking permit organized)
- David (staying local)
- Paola
- Jane
- Judy
Agenda Item Scratchpad:
Transition to OWL
- Review/refresher on Hinxton_OBO-Edit/Protege_4_workshop_Jan_2012
- How to update GO external disjointness axioms
- Debugging tips - understanding Jenkins pipeline, etc
- How to update GO extensions (x-signaling, x-plant-anatomy, ...)
- Some updates on obo/owl tools
- Oort updates
- New relevant protege plugins since Hinxton (Heiko to provide links)
- Jim Balhoff's obo-lint P4 plugin
- Jim Balhoff's obsoletion-util p4 plugin
- Jim Balhoff's depictions plugin
- Heiko's OE GV plugin for p4
- Any more? What would people like?
- Exercises
- Try day to day editing tasks in P4, convert to obo, commit
- Editing CL in OWL?
- Create Wishlist/feature/tool requests
Content
- Signaling?
- F-P links
- incorporation of column16 relationships into ontology terms
- add disjoint axioms
- identify new templates
Additional material
List any new material, papers etc of interest published since Hinxton
- Continuous Integration of Open Biological Ontology Libraries
- Galaxy-OPPL (published in Jan)
Papers to write
- Target JBMS issue? Primarily for 'ontologist-centric' papers.
- SAO/CC integration? General update on CC ontology?
- Content-specific papers - target bio journals - integrate with annotation
- Kidney
- Signaling?
- Tools
- Oort
- TermGenie
LOGISTICS
Meeting room
- Location: Lawrence Berkeley Laboratory
- Meeting room: 74-104
Accommodation
- LBL guesthouse
- Rate: $99/night (incl tax)
Travel
Paola:
arriving SFO on Sat. Jan. 26th at 7:15pm (UA8883);
departing SFO on Tue. Jan. 29th at 9:10pm (UA8882).
Jane:
arriving SFO on Sat. Jan. 26th at 5.25pm (AA6190);
departing SFO on Tue. Jan. 29th at 7.45pm (AA6189).