PAINT database update pipeline: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
(Created page with "==Import EXP files== * File location: * Managing differences: ** Missing EXP evidence ** New exp evidence (see for ex https://github.com/pantherdb/fullgo_paint_update/issu...")
 
mNo edit summary
Line 17: Line 17:


* List of messages for automatic changed: 'Comment' ('Update comment' in PAINT interface)
* List of messages for automatic changed: 'Comment' ('Update comment' in PAINT interface)
** What types of messages ? obsoletes, missing EXP... what else ?
* 'View omitted annotation information' -> generated on the fly ???
* 'View omitted annotation information' -> generated on the fly ???
** What types of messages ? tree changes information (missing nodes) - what else ?






[[Category:Reference Genome]] [[Category:Working Groups]]
[[Category:Reference Genome]] [[Category:Working Groups]]

Revision as of 12:47, 24 August 2018

Import EXP files

  • File location:
  • Managing differences:
    • Missing EXP evidence
    • New exp evidence

(see for ex https://github.com/pantherdb/fullgo_paint_update/issues/10)

    • Handling obsolete and merged terms

- obsolete terms: a) has a 'replaced_by' tag -> replace to the new term b) does not have a 'replaced_by' tag -> output message xxx

    • etc ?



  • List of messages for automatic changed: 'Comment' ('Update comment' in PAINT interface)
    • What types of messages ? obsoletes, missing EXP... what else ?
  • 'View omitted annotation information' -> generated on the fly ???
    • What types of messages ? tree changes information (missing nodes) - what else ?