PAMGO conference calls: Difference between revisions
Line 23: | Line 23: | ||
'''Induction and Upregulation terms''' | '''Induction and Upregulation terms''' | ||
Induction and Upregulation of........ are currently child terms of positive regulation. Should this be merged into positive regulation? | Induction and Upregulation of........ are currently child terms of positive regulation. Should this be merged into positive regulation? | ||
'''Changing wording in some host terms''' | '''Changing wording in some host terms''' | ||
See wiki.............and make comments | See wiki.............and make comments | ||
'''Mini | '''Mini Reviews''' | ||
'''Report''' | '''Report''' |
Revision as of 13:23, 14 February 2008
PAMGO Conference Call-February 15 2008
Association files submitted to GOC: see ftp://ftp.geneontology.org/pub/go/gene-associations and AMIGO
gene_association.PAMGO_Atumefaciens.gz gene_association.PAMGO_Oomycetes.gz
Update on association files on:
P. syringae Erwinia M. grisea
GOC announcement: Regulation terms
"For some time now, the GO content developers have been aware that regulatory processes are not necessarily integral to the processes (as previously indicated by the use of the 'part_of' relation) that they regulate. Nevertheless, regulatory processes have been represented as part_of the processes they regulate. We have long intended to replace these part_of relationships with a new relationship type called 'regulates'. We are now in a position to make this replacement" Entire e-mail attached. See
Induction and Upregulation terms
Induction and Upregulation of........ are currently child terms of positive regulation. Should this be merged into positive regulation?
Changing wording in some host terms
See wiki.............and make comments
Mini Reviews
Report
Use of PAMGO terms by virulence community-Michelle
Others
PAMGO Conference Call-November 15 2007
Test set of annotations sent to Chris Mungall (GOC) File:PAMGO test assoc.xls
New "Properties" column in the association file
Updated Evidence Code documentation. http://www.geneontology.org/GO.evidence.shtml New children codes under ISS (still under review)
Topic for discussion: Hypersensitive response (HR) and Programmed cell death (PCD) tree
See "PAMGO SUMMARY_2007" for Candace's proposal on this subject