Difference between revisions of "PAMGO conference calls"

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=='''PAMGO Conference Call-November 15 2007'''==
=='''PAMGO Conference Call-November 15 2007'''==

Revision as of 13:25, 14 February 2008

PAMGO Conference Call-February 15 2008

Association files submitted to GOC: see ftp://ftp.geneontology.org/pub/go/gene-associations and AMIGO


Update on association files on:

                 P. syringae
                 M. grisea

GOC announcement: Regulation terms

"For some time now, the GO content developers have been aware that regulatory processes are not necessarily integral to the processes (as previously indicated by the use of the 'part_of' relation) that they regulate. Nevertheless, regulatory processes have been represented as part_of the processes they regulate. We have long intended to replace these part_of relationships with a new relationship type called 'regulates'. We are now in a position to make this replacement" Entire e-mail attached. See

Induction and Upregulation terms

Induction and Upregulation of........ are currently child terms of positive regulation. Should this be merged into positive regulation?

Changing wording in some host terms

See wiki.............and make comments

Mini Reviews


   Use of PAMGO terms by virulence community-Michelle


PAMGO Conference Call-November 15 2007

Test set of annotations sent to Chris Mungall (GOC) File:PAMGO test assoc.xls

New "Properties" column in the association file

Updated Evidence Code documentation. http://www.geneontology.org/GO.evidence.shtml New children codes under ISS (still under review)

Topic for discussion: Hypersensitive response (HR) and Programmed cell death (PCD) tree

See "PAMGO SUMMARY_2007" for Candace's proposal on this subject