PAMGO conference calls
PAMGO Conference Call-February 15 2008
Association files submitted to GOC: see ftp://ftp.geneontology.org/pub/go/gene-associations and AMIGO
gene_association.PAMGO_Atumefaciens.gz gene_association.PAMGO_Oomycetes.gz
Update on association files on:
P. syringae Erwinia M. grisea
GOC announcement: Regultion terms
"For some time now, the GO content developers have been aware that
regulatory processes are not necessarily integral to the processes (as
previously indicated by the use of the 'part_of' relation) that they
regulate. Nevertheless, regulatory processes have been represented as
part_of the processes they regulate. We have long intended to replace
these part_of relationships with a new relationship type called
'regulates'. We are now in a position to make this replacement"
Entire e-mail attached. See
Induction and Upregulation terms Induction and Upregulation of........ are currently child terms of positive regulation. Should this be merged into positive regulation?
Changing wording in some host terms
See wiki.............and make comments
Mini Reviews
Report
Michelle
Others
PAMGO Conference Call-November 15 2007
Test set of annotations sent to Chris Mungall (GOC) File:PAMGO test assoc.xls
New "Properties" column in the association file
Updated Evidence Code documentation. http://www.geneontology.org/GO.evidence.shtml New children codes under ISS (still under review)
Topic for discussion: Hypersensitive response (HR) and Programmed cell death (PCD) tree
See "PAMGO SUMMARY_2007" for Candace's proposal on this subject