https://wiki.geneontology.org/index.php?title=PTHR16505&feed=atom&action=history
PTHR16505 - Revision history
2024-03-28T12:08:42Z
Revision history for this page on the wiki
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https://wiki.geneontology.org/index.php?title=PTHR16505&diff=53300&oldid=prev
Gail at 19:35, 10 July 2014
2014-07-10T19:35:36Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:35, 10 July 2014</td>
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category:Reference Genome]]</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''Beta-catenin interacting protein family'''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''Beta-catenin interacting protein family'''</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Since this family is so small and has so few annotations, I am posting the entire evidence file (minus boilerplate) instead of just questions. -Mike</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Since this family is so small and has so few annotations, I am posting the entire evidence file (minus boilerplate) instead of just questions. -Mike</div></td></tr>
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Gail
https://wiki.geneontology.org/index.php?title=PTHR16505&diff=30453&oldid=prev
Ln at 15:18, 27 August 2010
2010-08-27T15:18:07Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:18, 27 August 2010</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==CC==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==CC==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>-Mouse: There are 2 TAS annotations from PMID 10898789 ("nucleus" and "cytoplasm").</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>-Mouse: There are 2 TAS annotations from PMID 10898789 ("nucleus" and "cytoplasm").</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>-<del style="font-weight: bold; text-decoration: none;">curator response</del>: TAS annotations will be removed when experimental annotation exists.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>MSL 19 August 2010</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>MSL 19 August 2010</div></td></tr>
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Ln
https://wiki.geneontology.org/index.php?title=PTHR16505&diff=30452&oldid=prev
Ln at 15:17, 27 August 2010
2010-08-27T15:17:30Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:17, 27 August 2010</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l37">Line 37:</td>
<td colspan="2" class="diff-lineno">Line 37:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==CC==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==CC==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>-Mouse: There are 2 TAS annotations from PMID 10898789 ("nucleus" and "cytoplasm").</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>-Mouse: There are 2 TAS annotations from PMID 10898789 ("nucleus" and "cytoplasm").</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>TAS annotations will be removed when experimental annotation exists.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">-curator response: </ins>TAS annotations will be removed when experimental annotation exists.</div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>MSL 19 August 2010</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>MSL 19 August 2010</div></td></tr>
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Ln
https://wiki.geneontology.org/index.php?title=PTHR16505&diff=30451&oldid=prev
Ln at 15:16, 27 August 2010
2010-08-27T15:16:51Z
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<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:16, 27 August 2010</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==CC==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==CC==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>-Mouse: There are 2 TAS annotations from PMID 10898789 ("nucleus" and "cytoplasm").</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>-Mouse: There are 2 TAS annotations from PMID 10898789 ("nucleus" and "cytoplasm").</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">TAS annotations will be removed when experimental annotation exists.</ins></div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>MSL 19 August 2010</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>MSL 19 August 2010</div></td></tr>
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Ln
https://wiki.geneontology.org/index.php?title=PTHR16505&diff=30309&oldid=prev
Livstone: Created page with ''''Beta-catenin interacting protein family''' Since this family is so small and has so few annotations, I am posting the entire evidence file (minus boilerplate) instead of just …'
2010-08-20T16:27:54Z
<p>Created page with ''''Beta-catenin interacting protein family''' Since this family is so small and has so few annotations, I am posting the entire evidence file (minus boilerplate) instead of just …'</p>
<p><b>New page</b></p><div>'''Beta-catenin interacting protein family'''<br />
Since this family is so small and has so few annotations, I am posting the entire evidence file (minus boilerplate) instead of just questions. -Mike<br />
<br />
----<br />
<br />
=Description of phylogeny=<br />
This is a very small family with two paralogous vertebrate clades, one of beta-catenin interacting protein (Ctnnbip1), and one with Lzic (Leucine zipper and ICAT homologous domain-containing protein). Ctnnbip1 has one known molecular function: binding beta-catenin (from mouse); Lzic has one known molecular function: NOT binding beta-catenin (from zebrafish). There are several BP annotations for Ctnnbip1, but otherwise nothing else is annotated in GO.<br />
<br />
Since the only thing we really know about Lzic is that it doesn't bind beta catenin, I will treat the Ctnnbip1 clade as the entire family and AN4 as the root.<br />
<br />
Note: As of today, 19 Aug 2010, there are several annotations for human CTNNBIP1 in QuickGO that are not shown in PAINT. They are from as far back as 20100722.<br />
<br />
=Annotation notes=<br />
==MF==<br />
-As stated above, the only thing we know is that mouse Ctnnbip1 binds beta catenin. Propagate "beta-catenin binding" to AN4.<br />
<br />
==CC==<br />
-There are no CC annotations for this family.<br />
<br />
==BP==<br />
-Since only one protein, mouse Ctnnbip1, is annotated, propagate the following non-redundant terms to AN4:<br />
GO:0001658 branching involved in ureteric bud morphogenesis<br />
GO:0009952 anterior/posterior pattern formation<br />
GO:0048662 negative regulation of smooth muscle cell proliferation<br />
GO:0030178 negative regulation of Wnt receptor signaling pathway<br />
GO:0060633 negative regulation of transcription initiation from RNA polymerase II promoter<br />
GO:0010553 negative regulation of gene-specific transcription from RNA polymerase II promoter<br />
<br />
<br />
-Do not propagate the following terms where the effect is indirect or the meaning is covered by the above:<br />
GO:0043433 negative regulation of transcription factor activity<br />
GO:0043392 negative regulation of DNA binding<br />
<br />
<br />
=Notes for MOD curators=<br />
<br />
==CC==<br />
-Mouse: There are 2 TAS annotations from PMID 10898789 ("nucleus" and "cytoplasm").<br />
<br />
<br />
MSL 19 August 2010</div>
Livstone