Difference between revisions of "Phylogenetic Annotation Project"

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* [[GAF file 2.0]] survey of contributing groups
* [[GAF file 2.0]] survey of contributing groups
* [[RG:_Software|Reference Genome Software]] Plan to have some tracking system - supplanted with the db-version of Paint (2017)
* [[RG:_Software|Reference Genome Software]] Plan to have some tracking system - supplanted with the db-version of Paint (2017)
* [[Ref_genome_Annotation_progress_ideas_(Retired)]]





Revision as of 13:53, 17 January 2018


'Note that this was formerly called the Reference Genome Annotation Project'


The reference project group has developed a software to perform the annotations based on phylogenetic trees.

Phylogenetic_annotation_overview

PAINT_User_Guide

PAINT Curation guidelines

PAINT family curation tracking

https://docs.google.com/spreadsheets/d/1uHgcaXO7t9__9GuXgBibT0H-YlnU252IsRGWIyhCWN8/edit?usp=sharing. Not updated since Panther 12

Pages to review


At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.

At the April 2009 Reference Genome meeting it was decided to create a new file to replace the GP2protein file, called 'gene2geneproduct'. Specifications can be found on this page (will be added soon).


Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.


Past Annotation targets