Difference between revisions of "Phylogenetic Annotation Project"

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The reference project group has developed a software to perform the annotations based on phylogenetic trees.  
The reference project group has developed a software to perform the annotations based on phylogenetic trees.  


=[[Phylogenetic_annotation_overview]] =
=[[Phylogenetic_annotation_overview|Phylogenetic annotation overview]] =
=[[PAINT_User_Guide]]=
=[[PAINT_User_Guide|PAINT User Guide]]=


=[[PAINT_SOP|PAINT Curation guidelines]]=
=[[PAINT_SOP|PAINT Curation guidelines]]=

Revision as of 13:57, 17 January 2018


'Note that this was formerly called the Reference Genome Annotation Project'


The reference project group has developed a software to perform the annotations based on phylogenetic trees.

Phylogenetic annotation overview

PAINT User Guide

PAINT Curation guidelines

PAINT family curation tracking

https://docs.google.com/spreadsheets/d/1uHgcaXO7t9__9GuXgBibT0H-YlnU252IsRGWIyhCWN8/edit?usp=sharing. Not updated since Panther 12

Pages to review

2018-01-17 From 2017 Grant, suggestions for metrics: - fraction of human proteins in annotated families (PAINT progress) - impact: number of annotations added, for human and for other species


For a summary of some of the issues please open "HowToCaptureMetrics3" file. File:HowToCaptureMetrics3.doc (not sure this is still up to date)


At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.

At the April 2009 Reference Genome meeting it was decided to create a new file to replace the GP2protein file, called 'gene2geneproduct'. Specifications can be found on this page (will be added soon).


Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.


Past Annotation targets