Difference between revisions of "Phylogenetic Annotation Project"

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* [[Scripts to ensure PAINT data integrity]]
* [[Scripts to ensure PAINT data integrity]]


*[[Phylogenetic Annotation Metrics]] | Metrics: Discussion on annotation progress measurements
* Metrics: Discussion on annotation progress measurements


2018-01-17  
2018-01-17  

Revision as of 14:03, 17 January 2018


'Note that this was formerly called the Reference Genome Annotation Project'


The reference project group has developed a software to perform the annotations based on phylogenetic trees.

Phylogenetic annotation overview

PAINT User Guide

PAINT Curation guidelines

PAINT family curation tracking

https://docs.google.com/spreadsheets/d/1uHgcaXO7t9__9GuXgBibT0H-YlnU252IsRGWIyhCWN8/edit?usp=sharing. Not updated since Panther 12

Pages to review

  • Metrics: Discussion on annotation progress measurements

2018-01-17 From 2017 Grant, suggestions for metrics: - fraction of human proteins in annotated families (PAINT progress) - impact: number of annotations added, for human and for other species


For a summary of some of the issues please open "HowToCaptureMetrics3" file. File:HowToCaptureMetrics3.doc (not sure this is still up to date)


At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.



Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.


Past Annotation targets