Difference between revisions of "Phylogenetic Annotation Project"

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* Orthology determination: Data used to make orthology calls
* [[reference proteomes files]]: to be moved elsewhere
** [[reference proteomes files]]
At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.

=Archived & retired Pages=
=Archived & retired Pages=

Revision as of 14:06, 17 January 2018

'Note that this was formerly called the Reference Genome Annotation Project'

The reference project group has developed a software to perform the annotations based on phylogenetic trees.

Phylogenetic annotation overview

PAINT User Guide

PAINT Curation guidelines

PAINT family curation tracking

https://docs.google.com/spreadsheets/d/1uHgcaXO7t9__9GuXgBibT0H-YlnU252IsRGWIyhCWN8/edit?usp=sharing. Not updated since Panther 12

Pages to review

  • Metrics: Discussion on annotation progress measurements
    • From 2017 Grant, suggestions for metrics:
      • fraction of human proteins in annotated families (PAINT progress)
      • impact: number of annotations added, for human and for other species
    • From a previous grant, see File:HowToCaptureMetrics3.doc

Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.

Past Annotation targets