Difference between revisions of "Phylogenetic Annotation Project"

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=Pages to review=
=Pages to review=
* [[Scripts to ensure PAINT data integrity]] ('touch-up'; incomplete and out of date; need to find the correct location of this documentation)
* [[Scripts to ensure PAINT data integrity]] ('touch-up'; incomplete and out of date; need to find the correct location of this documentation)
* [[reference proteomes files]]: to be moved elsewhere
* Metrics: Discussion on annotation progress measurements
* Metrics: Discussion on annotation progress measurements
**From 2017 Grant, suggestions for metrics:  
**From 2017 Grant, suggestions for metrics:  
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*** impact: number of annotations added, for human and for other species
*** impact: number of annotations added, for human and for other species
** From a previous grant, see [[Image:HowToCaptureMetrics3.doc|thumb|Description]]  
** From a previous grant, see [[Image:HowToCaptureMetrics3.doc|thumb|Description]]  
*** Other ideas (to be reviewed): [[Metrics:_breath_and_depth_of_annotations |Breath and Depth]]
** Other ideas (to be reviewed): [[Metrics:_breath_and_depth_of_annotations |Breath and Depth]]
* [[reference proteomes files]]: to be moved elsewhere


=Archived & retired Pages=
=Archived & retired Pages=

Revision as of 14:07, 17 January 2018


'Note that this was formerly called the Reference Genome Annotation Project'


The reference project group has developed a software to perform the annotations based on phylogenetic trees.

Phylogenetic annotation overview

PAINT User Guide

PAINT Curation guidelines

PAINT family curation tracking

https://docs.google.com/spreadsheets/d/1uHgcaXO7t9__9GuXgBibT0H-YlnU252IsRGWIyhCWN8/edit?usp=sharing. Not updated since Panther 12

Pages to review

Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.


Past Annotation targets