Difference between revisions of "Phylogenetic Annotation Project"

From GO Wiki
Jump to navigation Jump to search
m
Line 24: Line 24:
=Pages to review=
=Pages to review=
* http://wiki.geneontology.org/index.php/PAINT_annotation_working_group
* http://wiki.geneontology.org/index.php/PAINT_annotation_working_group
* [[Scripts to ensure PAINT data integrity]] ('touch-up'; incomplete and out of date; need to find the correct location of this documentation)
* [[reference proteomes files]]: to be moved elsewhere
* [[reference proteomes files]]: to be moved elsewhere
* Metrics: Discussion on annotation progress measurements
* Metrics: Discussion on annotation progress measurements
Line 33: Line 32:
** Other ideas (to be reviewed): [[Metrics:_breath_and_depth_of_annotations |Breath and Depth]]
** Other ideas (to be reviewed): [[Metrics:_breath_and_depth_of_annotations |Breath and Depth]]
**** http://wiki.geneontology.org/index.php/GO_Reference_Genome_Meeting_Metric_Plan
**** http://wiki.geneontology.org/index.php/GO_Reference_Genome_Meeting_Metric_Plan
=Archived & retired Pages=
=Archived & retired Pages=



Revision as of 10:56, 12 April 2019

Note that this project was formerly called the Reference Genome Annotation Project.

The Phylogenetic Annotation Project performs annotation inferences across evolutionary related proteins based on known function of proteins within PANTHER [1] phylogenetic family trees.

Phylogenetic annotation overview

PAINT User Guide

PAINT Curation guidelines

PAINT Update pipeline

PAINT GAF production

PAINT_GAF_QC-examples

PAINT_Conference_Calls

  • Monthly, every First Tuesday of the month, 9 AM Pacific/6 PM Europe as of March 2019
  • Link to the zoom is in the Google Calendar

PAINT family curation tracking

https://docs.google.com/spreadsheets/d/1uHgcaXO7t9__9GuXgBibT0H-YlnU252IsRGWIyhCWN8/edit?usp=sharing. Not updated since Panther 12

Pages to review

Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.


Past Annotation targets

Target Gene List August 2006-April 2008