Phylogenetic Annotation Project

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PAINT : Software for tree annotation

The reference project group has developed a software to perform the annotations based on phylogenetic trees.

PAINT Curation guidelines

Pages to review


Orthology determination: Data used to make orthology calls

reference proteomes files

At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.

New gene2geneproduct file

At the April 2009 Reference Genome meeting it was decided to create a new file to replace the GP2protein file, called 'gene2geneproduct'. Specifications can be found on this page (will be added soon).


Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.


Past Annotation targets