Phylogenetic Annotation Project

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'Note that this was formerly called the Reference Genome Annotation Project'

The reference project group has developed a software to perform the annotations based on phylogenetic trees.

Phylogenetic annotation overview

PAINT User Guide

PAINT Curation guidelines

PAINT family curation tracking Not updated since Panther 12

Pages to review

2018-01-17 From 2017 Grant, suggestions for metrics: - fraction of human proteins in annotated families (PAINT progress) - impact: number of annotations added, for human and for other species

For a summary of some of the issues please open "HowToCaptureMetrics3" file. File:HowToCaptureMetrics3.doc (not sure this is still up to date)

At the July 2009 Quest for Orthologs meeting, it was agreed to decide upon a standard set of genomes, and compile "complete" sets of protein coding genes for each genome, and a representative protein sequence for each gene.

Archived & retired Pages

Those pages are kept as reference but the information in them is not the most current information.

Past Annotation targets