PomBase December 2015: Difference between revisions
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(Progress report) |
(Progress Report) |
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|Total Genes annotated with at least one GO term of any kind || ????? || 5289 ||tba||tba | |Total Genes annotated with at least one GO term of any kind || ????? || 5289 ||tba||tba | ||
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| Total Annotations: || | | Total Annotations: || 39233 || 40718 || tba || tba | ||
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| Total Number of Genes: || ???? || 5451 ||tba || tba | | Total Number of Genes: || ???? || 5451 ||tba || tba | ||
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| colspan=5 align=center bgcolor=white| '''Total non-IEA Annotation''' | | colspan=5 align=center bgcolor=white| '''Total non-IEA Annotation''' | ||
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|Total Annotations: || | |Total Annotations: ||5342 || 4290 || tba||tba || | ||
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|colspan=5 align=center bgcolor=white| '''Annotation by Direct Experiment''' | |colspan=5 align=center bgcolor=white| '''Annotation by Direct Experiment''' |
Revision as of 07:52, 19 November 2015
PomBase, December 2015
PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)
1. Staff working on GOC tasks
PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock
Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford
NO STAFF FUNDED BY GO OR GOC gGRANTS
2. Annotation progress
Annotation Progress
Annotation Type | last time | Dec 5, 2015 | Change | % change | |
---|---|---|---|---|---|
Total Genes annotated with at least one GO term of any kind | ????? | 5289 | tba | tba | |
Total Annotations: | 39233 | 40718 | tba | tba | |
Total Number of Genes: | ???? | 5451 | tba | tba | |
Total non-IEA Annotation | |||||
Total Annotations: | 5342 | 4290 | tba | tba | |
Annotation by Direct Experiment | |||||
MGI Curated Mouse Genes | 12170 | tba | tba | tba | |
MGI Curated Annotations | 82573 | tba | tba | tba | |
GOA Curated Mouse Genes: | 4565 | tba | tba | tba3 | |
GOA Curated Annotations: | 26002 | tba | tba | tba | |
Annotation by Orthology | |||||
Total Genes Annotated by Orthology | 11435 | tba | tba | tba | |
Total Orthology Annotation | 92787 | tba | tba | tba | |
Genes Annotated by Human Orthology Load (GOA) | 10207 | tba | tba | tba | |
Total Annotation by Human Orthology Load | 61355 | tba | tba | tba | |
Genes Annotated by Rat Orthology Load (RGD) | 4415 | tba | tba | tba | |
Total Annotations by Rat Orthology Load | 27006 | tba | tba | tba | |
IEA Annotation | |||||
Total Genes with IEA Annotations | 14602 | tba | tba | tba | |
Total IEA Annotations | 99662 | tba | tba | tba | |
Total Genes with SwissProt to GO Annotations | 14211 | tba | tba | tba | |
Total SwissProt to GO Annotations | 55788 | tba | tba | tba | |
Total Genes with Interpro to GO Annotations | 10054 | tba | tba | tba | |
Total Interpro to GO Annotations | 25511 | tba | tba | tba | |
Total Genes with EC to GO Annotations | 1734 | tba | tba | tba | |
Total EC to GO Annotations | 18363 | tba | tba | tba |