PomBase December 2015: Difference between revisions

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(Progress Report)
(Progress Report)
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{| class="wikitable" cellpadding="5"
{| class="wikitable" cellpadding="5"
!Annotation Type !! last time !! Dec 5, 2015 !! Change !!% change
!Annotation Type !! l| Dec 2014 !! Dec 5, 2015 !! Change !!% change
|-
|-
|Total Genes annotated with at least one GO term of any kind || ?????  || 5289 ||tba||tba  
|Total Genes annotated with at least one GO term of any kind || ?????  || 5289 ||tba||tba  
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|-
|-
|  Total Number of Genes: || ???? || 5451 ||tba  || tba
|  Total Number of Genes: || ???? || 5451 ||tba  || tba
|-
| colspan=5 align=center bgcolor=white| '''Total non-IEA Annotation'''
|-
|Total Annotations: ||5342 || 4290 || tba||tba ||
|-
|-
|colspan=5 align=center bgcolor=white| '''Annotation by Direct Experiment'''
|colspan=5 align=center bgcolor=white| '''Annotation by Direct Experiment'''
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|colspan=5 align=center bgcolor=white| '''IEA Annotation'''
|colspan=5 align=center bgcolor=white| '''IEA Annotation'''
|-
|-
|Total Genes with IEA Annotations ||14602 ||tba || tba|| tba ||
| colspan=5 align=center bgcolor=white| '''Total IEA Annotation'''
|-
|-
|Total IEA Annotations ||99662 ||tba || tba||tba ||
|Total Annotations: ||5342 || 4290 || tba||tba ||
|-
|Total Genes with SwissProt to GO Annotations ||14211
||tba ||tba||tba ||
|-
|Total SwissProt to GO Annotations ||55788 ||tba || tba||tba ||
|-
|Total Genes with Interpro to GO Annotations ||10054
||tba ||tba || tba||
|-
|Total Interpro to GO Annotations ||25511
||tba ||tba ||tba ||
|-
|Total Genes with EC to GO Annotations ||1734 ||tba ||tba || tba||
|-
|Total EC to GO Annotations ||18363 ||tba ||tba ||tba ||  
 
|}
|}

Revision as of 07:59, 19 November 2015


PomBase, December 2015

PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)

1. Staff working on GOC tasks

PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock

Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford

NO STAFF FUNDED BY GO OR GOC gGRANTS

2. Annotation progress

Annotation Progress

Annotation Type Dec 2014 Dec 5, 2015 Change % change
Total Genes annotated with at least one GO term of any kind ????? 5289 tba tba
Total Annotations: 39233 40718 tba tba
Total Number of Genes: ???? 5451 tba tba
Annotation by Direct Experiment
MGI Curated Mouse Genes 12170 tba tba tba
MGI Curated Annotations 82573 tba tba tba
GOA Curated Mouse Genes: 4565 tba tba tba3
GOA Curated Annotations: 26002 tba tba tba
Annotation by Orthology
Total Genes Annotated by Orthology 11435 tba tba tba
Total Orthology Annotation 92787 tba tba tba
Genes Annotated by Human Orthology Load (GOA) 10207 tba tba tba
Total Annotation by Human Orthology Load 61355 tba tba tba
Genes Annotated by Rat Orthology Load (RGD) 4415 tba tba tba
Total Annotations by Rat Orthology Load 27006 tba tba tba
IEA Annotation
Total IEA Annotation
Total Annotations: 5342 4290 tba tba
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