PomBase December 2015: Difference between revisions

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(Progress Report)
(Progress report)
Line 21: Line 21:
!Annotation Type !! l| Dec 2014  !! Dec 5, 2015 !! Change !!% change
!Annotation Type !! l| Dec 2014  !! Dec 5, 2015 !! Change !!% change
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|-
|Total Genes annotated with at least one GO term of any kind || ?????  || 5289 ||tba||tba  
| Total Number of Genes: || 5052* || 5451 ||tba || tba
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|-
|Total Genes  with at least one (non root) GO  || ?????  || 5289 ||tba||tba
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|Total Genes  with at least one (non root) BP  || 4316*  || ???? ||tba||tba
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|Total Genes  with at least one (non root) CC  || 4894*  || ???? ||tba||tba
|
|Total Genes  with at least one (non root) MF  || 3682*  || ???? ||tba||tba
|
| Total Annotations: || 39233 || 40718 || tba || tba
| Total Annotations: || 39233 || 40718 || tba || tba
|-
|-
|  Total Number of Genes: || ???? || 5451 ||tba  || tba
 
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|colspan=5 align=center bgcolor=white| '''Annotation by Direct Experiment'''
|colspan=5 align=center bgcolor=white| '''Annotation by Direct Experiment'''
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|MGI Curated Mouse Genes ||12170 ||tba ||tba||tba ||
|MGI Curated Mouse Genes ||12170 ||tba ||tba||tba  
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|MGI Curated Annotations ||82573 ||tba ||tba || tba||
|MGI Curated Annotations ||82573 ||tba ||tba || tba
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|GOA Curated Mouse Genes: ||4565 ||tba ||tba ||tba3 ||
|GOA Curated Mouse Genes: ||4565 ||tba ||tba ||tba
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|GOA Curated Annotations: ||26002 ||tba ||tba ||tba ||
|GOA Curated Annotations: ||26002 ||tba ||tba ||tba  
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|colspan=5 align=center bgcolor=white| '''Annotation by Orthology'''
|colspan=5 align=center bgcolor=white| '''Annotation by Orthology'''

Revision as of 08:08, 19 November 2015


PomBase, December 2015

PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)

1. Staff working on GOC tasks

PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock

Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford

NO STAFF FUNDED BY GO OR GOC gGRANTS

2. Annotation progress

Annotation Progress

Annotation Type Dec 2014 Dec 5, 2015 Change % change
Total Number of Genes: 5052* 5451 tba tba
Total Genes with at least one (non root) GO ????? 5289 tba tba
Total Genes with at least one (non root) BP 4316* ???? tba tba
Total Genes with at least one (non root) CC 4894* ???? tba tba Total Genes with at least one (non root) MF 3682* ???? tba tba Total Annotations: 39233 40718 tba tba
Annotation by Direct Experiment
MGI Curated Mouse Genes 12170 tba tba tba
MGI Curated Annotations 82573 tba tba tba
GOA Curated Mouse Genes: 4565 tba tba tba
GOA Curated Annotations: 26002 tba tba tba
Annotation by Orthology
Total Genes Annotated by Orthology 11435 tba tba tba
Total Orthology Annotation 92787 tba tba tba
Genes Annotated by Human Orthology Load (GOA) 10207 tba tba tba
Total Annotation by Human Orthology Load 61355 tba tba tba
Genes Annotated by Rat Orthology Load (RGD) 4415 tba tba tba
Total Annotations by Rat Orthology Load 27006 tba tba tba
IEA Annotation
Total IEA Annotation
Total Annotations: 5342 4290 tba tba