PomBase December 2015: Difference between revisions
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(Progress Report) |
(Progress report) |
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| Total Number of Genes: || 5052* || 5451 ||tba || tba | | Total Number of Genes: || 5052* || 5451 ||tba || tba | ||
|- | |- | ||
|Total Genes with at least one (non root) GO || ????? || 5289 || | |Total Genes with at least one (non root) GO || ????? || 5289 ||n/a|| n/a | ||
|- | |- | ||
|Total Genes with at least one (non root) BP || 4316* || | |Total Genes with at least one (non root) BP || 4316* || 4668 || n/a|| n/a | ||
|- | |- | ||
|Total Genes with at least one (non root) CC || 4894* || | |Total Genes with at least one (non root) CC || 4894* || 5191 || n/a|| n/a | ||
|- | |- | ||
|Total Genes with at least one (non root) MF || 3682* || | |Total Genes with at least one (non root) MF || 3682* || 3958 || n/a|| n/a | ||
|- | |- | ||
| Total Annotations: || 39233 || 40718 || | | Total Annotations: || 39233 || 40718 || +1435 || +3.65 | ||
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Revision as of 08:17, 19 November 2015
PomBase, December 2015
PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)
1. Staff working on GOC tasks
PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock
Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford
NO STAFF FUNDED BY GO OR GOC gGRANTS
2. Annotation progress
Annotation Progress
| Annotation Type | Dec 2014 | Dec 5, 2015 | Change | % change | |
|---|---|---|---|---|---|
| Total Number of Genes: | 5052* | 5451 | tba | tba | |
| Total Genes with at least one (non root) GO | ????? | 5289 | n/a | n/a | |
| Total Genes with at least one (non root) BP | 4316* | 4668 | n/a | n/a | |
| Total Genes with at least one (non root) CC | 4894* | 5191 | n/a | n/a | |
| Total Genes with at least one (non root) MF | 3682* | 3958 | n/a | n/a | |
| Total Annotations: | 39233 | 40718 | +1435 | +3.65 | |
| Annotation by Direct Experiment | |||||
| MGI Curated Mouse Genes | 12170 | tba | tba | tba | |
| MGI Curated Annotations | 82573 | tba | tba | tba | |
| GOA Curated Mouse Genes: | 4565 | tba | tba | tba | |
| GOA Curated Annotations: | 26002 | tba | tba | tba | |
| Annotation by Orthology | |||||
| Total Genes Annotated by Orthology | 11435 | tba | tba | tba | |
| Total Orthology Annotation | 92787 | tba | tba | tba | |
| Genes Annotated by Human Orthology Load (GOA) | 10207 | tba | tba | tba | |
| Total Annotation by Human Orthology Load | 61355 | tba | tba | tba | |
| Genes Annotated by Rat Orthology Load (RGD) | 4415 | tba | tba | tba | |
| Total Annotations by Rat Orthology Load | 27006 | tba | tba | tba | |
| IEA Annotation | |||||
| Total IEA Annotation | |||||
| Total Annotations: | 5342 | 4290 | tba | tba | |