PomBase December 2015: Difference between revisions

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(Progress report)
(Progress report)
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|colspan=5 align=center bgcolor=white| '''Annotation by Orthology'''
|colspan=5 align=center bgcolor=white| '''Annotation by Orthology'''
|-
|-
|Total Genes Annotated by Orthology ||11435
|Total Genes Annotated by Orthology ||?????|| 3484 ||tba ||tba ||
||tba ||tba ||tba ||
|-
|-
|Total Orthology Annotation ||92787
|Total Orthology Annotation ||???? || 9346 ||tba ||tba ||
||tba ||tba ||tba ||
|-
|-
|Genes Annotated by Human Orthology Load (GOA) ||10207 ||tba || tba ||tba ||
I Annotations by GOA/Uniprot ||????? || 128 || tba ||tba ||
|-
|-
|Total Annotation by Human Orthology Load ||61355 ||tba || tba||tba||  
I Annotations by PomBase ||??? || 9134 || tba ||tba ||
|-
|-
|Genes Annotated by Rat Orthology Load (RGD) ||4415 ||tba ||tba ||tba ||
I Annotations by GOC || ???? || 4 || tba ||tba ||
|-
|Total Annotations by Rat Orthology Load || 27006||tba || tba|| tba||  
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|-
|colspan=5 align=center bgcolor=white| '''IEA Annotation'''
|colspan=5 align=center bgcolor=white| '''IEA Annotation'''
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| colspan=5 align=center bgcolor=white| '''Total IEA Annotation'''
|-
|-
|Total Annotations: ||5342 || 4290 || tba||tba ||
|Total Annotations: ||5342 || 4290 || tba||tba ||
|}
|}

Revision as of 08:30, 19 November 2015


PomBase, December 2015

PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)

1. Staff working on GOC tasks

PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock

Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford

NO STAFF FUNDED BY GO OR GOC gGRANTS

2. Annotation progress

Annotation Progress

I Annotations by GOA/Uniprot ||????? || 128 || tba ||tba || I Annotations by PomBase ||??? || 9134 || tba ||tba || I Annotations by GOC || ???? || 4 || tba ||tba ||
Annotation Type Dec 2014 Dec 5, 2015 Change % change
Total Number of Genes: 5052* 5451 tba tba
Total Genes with at least one (non root) GO ????? 5289 n/a n/a
Total Genes with at least one (non root) BP 4316* 4668 n/a n/a
Total Genes with at least one (non root) CC 4894* 5191 n/a n/a
Total Genes with at least one (non root) MF 3682* 3958 n/a n/a
Total Annotations: 39233 40718 +1435 +3.65
Annotation by Direct Experiment
MGI Curated Mouse Genes 12170 tba tba tba
MGI Curated Annotations 82573 tba tba tba
GOA Curated Mouse Genes: 4565 tba tba tba
GOA Curated Annotations: 26002 tba tba tba
Annotation by Orthology
Total Genes Annotated by Orthology ????? 3484 tba tba
Total Orthology Annotation ???? 9346 tba tba
IEA Annotation
Total Annotations: 5342 4290 tba tba
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