PomBase December 2015

PomBase, December 2015

PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)

1. Staff working on GOC tasks

PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock

Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford

NO STAFF FUNDED BY GO OR GOC gGRANTS

Annotation Progress

I Annotations by GOA-UniProt ||????? || 128 || tba ||tba I Annotations by PomBase ||??? || 9134 || tba ||tba I Annotations by GOC || ???? || 4 || tba ||tba

Annotation Type	Dec 2014	Dec 5, 2015	Change	% change
Total Number of Genes:	5052*	5451	tba	tba
Total Genes with at least one (non root) GO	?????	5289	n/a	n/a
Total Genes with at least one (non root) BP	4316*	4668	n/a	n/a
Total Genes with at least one (non root) CC	4894*	5191	n/a	n/a
Total Genes with at least one (non root) MF	3682*	3958	n/a	n/a
Total Annotations:	39233	40718	+1435	+3.65
Annotation by Direct Experiment
MGI Curated Mouse Genes	12170	tba	tba	tba
MGI Curated Annotations	82573	tba	tba	tba
GOA Curated Mouse Genes:	4565	tba	tba	tba
GOA Curated Annotations:	26002	tba	tba	tba
Annotation by Orthology
Total Genes Annotated by Orthology	?????	3484	tba	tba
Total Orthology Annotation	????	9346	tba	tba
IEA Annotation
Total Annotations:	5342	4290	tba	tba