PomBase December 2015: Difference between revisions

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(Progress report)
(Progress report)
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=== 2. Annotation progress ===
=== 2. Annotation progress ===
{| class="wikitable" cellpadding="5"
!Annotation Type !! l| Dec 2014  !! Dec 5, 2015 !! Change !!% change
|-
|  Total Number of Genes: * Nos from 2014 are protein coding only || 5052* || 5451 ||n/a  || n/a
|-
|Total Genes  with at least one (non root) GO  || ?????  || 5289 ||n/a|| n/a
|-
|Total Genes  with at least one (non root) BP  || 4316*  || 4668 || n/a|| n/a
|-
|Total Genes  with at least one (non root) CC  || 4894*  || 5191  || n/a|| n/a
|-
|Total Genes  with at least one (non root) MF  || 3682*  || 3958 || n/a|| n/a
|-
| Total Annotations: || 39233 || 40718 || +1435  || +3.65
|-
|colspan=5 align=center bgcolor=white| '''Annotation by Direct Experiment'''
|-
|MGI Curated Mouse Genes ||12170 ||tba ||tba||tba
|-
|colspan=5 align=center bgcolor=white| '''Annotation by Orthology'''
|-
|Total Genes Annotated by Orthology ||?????|| 3484 ||tba ||tba
|-
|Total Orthology Annotation ||???? || 9346 ||tba ||tba
|-
| Annotation by PomBase||?????|| 9134 ||tba ||tba
|-
| Annotation by GOA-UniProt ||???? || 128 ||tba ||tba
|-
| Annotation by GOC ||???? || 4 ||tba ||tba
|-
|colspan=5 align=center bgcolor=white| '''IEA Annotation'''
|-
|Total Annotations: ||5342 || 4290 || tba||tba
|}


= Annotation Progress =
= Annotation Progress =

Revision as of 08:44, 19 November 2015


PomBase, December 2015

PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)

1. Staff working on GOC tasks

PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock

Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford

NO STAFF FUNDED BY GO OR GOC gGRANTS

2. Annotation progress

Annotation Type Dec 2014 Dec 5, 2015 Change % change
Total Number of Genes: * Nos from 2014 are protein coding only 5052* 5451 n/a n/a
Total Genes with at least one (non root) GO ????? 5289 n/a n/a
Total Genes with at least one (non root) BP 4316* 4668 n/a n/a
Total Genes with at least one (non root) CC 4894* 5191 n/a n/a
Total Genes with at least one (non root) MF 3682* 3958 n/a n/a
Total Annotations: 39233 40718 +1435 +3.65
Annotation by Direct Experiment
MGI Curated Mouse Genes 12170 tba tba tba
Annotation by Orthology
Total Genes Annotated by Orthology ????? 3484 tba tba
Total Orthology Annotation ???? 9346 tba tba
Annotation by PomBase ????? 9134 tba tba
Annotation by GOA-UniProt ???? 128 tba tba
Annotation by GOC ???? 4 tba tba
IEA Annotation
Total Annotations: 5342 4290 tba tba

Annotation Progress

Annotation Type Dec 2014 Dec 5, 2015 Change % change
Total Number of Genes: * Nos from 2014 are protein coding only 5052* 5451 n/a n/a
Total Genes with at least one (non root) GO ????? 5289 n/a n/a
Total Genes with at least one (non root) BP 4316* 4668 n/a n/a
Total Genes with at least one (non root) CC 4894* 5191 n/a n/a
Total Genes with at least one (non root) MF 3682* 3958 n/a n/a
Total Annotations: 39233 40718 +1435 +3.65
Annotation by Direct Experiment
MGI Curated Mouse Genes 12170 tba tba tba
Annotation by Orthology
Total Genes Annotated by Orthology ????? 3484 tba tba
Total Orthology Annotation ???? 9346 tba tba
Annotation by PomBase ????? 9134 tba tba
Annotation by GOA-UniProt ???? 128 tba tba
Annotation by GOC ???? 4 tba tba
IEA Annotation
Total Annotations: 5342 4290 tba tba