PomBase December 2015
PomBase, December 2015
PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)
1. Staff working on GOC tasks
PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock
IT staff associated with GO related projects online curation tool and of pipelines and Website, automated QC
Mark McDowall, Kim Rutherford
NO STAFF FUNDED BY GO OR GOC grants
2. Annotation progress
Annotation Progress
Annotation Type | last time | Dec 5, 2015 | Change | % change | |
---|---|---|---|---|---|
Total Genes annotated with at least one GO term of any kind | ????? | 5289 | tba | tba | |
Total Annotations: | ?????? | 40718 | tba | tba | |
Total non-IEA Annotation | |||||
Total Number of Genes: | ???? | 5451 | tba | tba | |
Total Annotations: | 242025 | tba | tba | tba | |
Annotation by Direct Experiment | |||||
MGI Curated Mouse Genes | 12170 | tba | tba | tba | |
MGI Curated Annotations | 82573 | tba | tba | tba | |
GOA Curated Mouse Genes: | 4565 | tba | tba | tba3 | |
GOA Curated Annotations: | 26002 | tba | tba | tba | |
Annotation by Orthology | |||||
Total Genes Annotated by Orthology | 11435 | tba | tba | tba | |
Total Orthology Annotation | 92787 | tba | tba | tba | |
Genes Annotated by Human Orthology Load (GOA) | 10207 | tba | tba | tba | |
Total Annotation by Human Orthology Load | 61355 | tba | tba | tba | |
Genes Annotated by Rat Orthology Load (RGD) | 4415 | tba | tba | tba | |
Total Annotations by Rat Orthology Load | 27006 | tba | tba | tba | |
IEA Annotation | |||||
Total Genes with IEA Annotations | 14602 | tba | tba | tba | |
Total IEA Annotations | 99662 | tba | tba | tba | |
Total Genes with SwissProt to GO Annotations | 14211 | tba | tba | tba | |
Total SwissProt to GO Annotations | 55788 | tba | tba | tba | |
Total Genes with Interpro to GO Annotations | 10054 | tba | tba | tba | |
Total Interpro to GO Annotations | 25511 | tba | tba | tba | |
Total Genes with EC to GO Annotations | 1734 | tba | tba | tba | |
Total EC to GO Annotations | 18363 | tba | tba | tba |