PomBase December 2015
PomBase, December 2015
PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)
1. Staff working on GOC tasks
PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock
Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford
NO STAFF FUNDED BY GO OR GOC gGRANTS
2. Annotation progress
Annotation Progress
Annotation Type | last time | Dec 5, 2015 | Change | % change | |
---|---|---|---|---|---|
Total Genes annotated with at least one GO term of any kind | ????? | 5289 | tba | tba | |
Total Annotations: | ?????? | 40718 | tba | tba | |
Total non-IEA Annotation | |||||
Total Number of Genes: | ???? | 5451 | tba | tba | |
Total Annotations: | 242025 | tba | tba | tba | |
Annotation by Direct Experiment | |||||
MGI Curated Mouse Genes | 12170 | tba | tba | tba | |
MGI Curated Annotations | 82573 | tba | tba | tba | |
GOA Curated Mouse Genes: | 4565 | tba | tba | tba3 | |
GOA Curated Annotations: | 26002 | tba | tba | tba | |
Annotation by Orthology | |||||
Total Genes Annotated by Orthology | 11435 | tba | tba | tba | |
Total Orthology Annotation | 92787 | tba | tba | tba | |
Genes Annotated by Human Orthology Load (GOA) | 10207 | tba | tba | tba | |
Total Annotation by Human Orthology Load | 61355 | tba | tba | tba | |
Genes Annotated by Rat Orthology Load (RGD) | 4415 | tba | tba | tba | |
Total Annotations by Rat Orthology Load | 27006 | tba | tba | tba | |
IEA Annotation | |||||
Total Genes with IEA Annotations | 14602 | tba | tba | tba | |
Total IEA Annotations | 99662 | tba | tba | tba | |
Total Genes with SwissProt to GO Annotations | 14211 | tba | tba | tba | |
Total SwissProt to GO Annotations | 55788 | tba | tba | tba | |
Total Genes with Interpro to GO Annotations | 10054 | tba | tba | tba | |
Total Interpro to GO Annotations | 25511 | tba | tba | tba | |
Total Genes with EC to GO Annotations | 1734 | tba | tba | tba | |
Total EC to GO Annotations | 18363 | tba | tba | tba |