PomBase December 2015
PomBase, December 2015
PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)
1. Staff working on GOC tasks
PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock
Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford
NO STAFF FUNDED BY GO OR GOC gGRANTS
2. Annotation progress
Annotation Progress
| Annotation Type | Dec 2014 | Dec 5, 2015 | Change | % change | |
|---|---|---|---|---|---|
| Total Number of Genes: | 5052* | 5451 | tba | tba | |
| Total Genes with at least one (non root) GO | ????? | 5289 | tba | tba | |
| Total Genes with at least one (non root) BP | 4316* | ???? | tba | tba | |
| Total Genes with at least one (non root) CC | 4894* | ???? | tba | tba | |
| Total Genes with at least one (non root) MF | 3682* | ???? | tba | tba | |
| Total Annotations: | 39233 | 40718 | tba | tba | |
| Annotation by Direct Experiment | |||||
| MGI Curated Mouse Genes | 12170 | tba | tba | tba | |
| MGI Curated Annotations | 82573 | tba | tba | tba | |
| GOA Curated Mouse Genes: | 4565 | tba | tba | tba | |
| GOA Curated Annotations: | 26002 | tba | tba | tba | |
| Annotation by Orthology | |||||
| Total Genes Annotated by Orthology | 11435 | tba | tba | tba | |
| Total Orthology Annotation | 92787 | tba | tba | tba | |
| Genes Annotated by Human Orthology Load (GOA) | 10207 | tba | tba | tba | |
| Total Annotation by Human Orthology Load | 61355 | tba | tba | tba | |
| Genes Annotated by Rat Orthology Load (RGD) | 4415 | tba | tba | tba | |
| Total Annotations by Rat Orthology Load | 27006 | tba | tba | tba | |
| IEA Annotation | |||||
| Total IEA Annotation | |||||
| Total Annotations: | 5342 | 4290 | tba | tba | |