PomBase December 2015

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Revision as of 08:41, 19 November 2015 by Valwood (talk | contribs) (Progress report)
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PomBase, December 2015

PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)

1. Staff working on GOC tasks

PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock

Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford

NO STAFF FUNDED BY GO OR GOC gGRANTS

2. Annotation progress

Annotation Progress

Annotation Type Dec 2014 Dec 5, 2015 Change % change
Total Number of Genes: 5052* 5451 tba tba
Total Genes with at least one (non root) GO ????? 5289 n/a n/a
Total Genes with at least one (non root) BP 4316* 4668 n/a n/a
Total Genes with at least one (non root) CC 4894* 5191 n/a n/a
Total Genes with at least one (non root) MF 3682* 3958 n/a n/a
Total Annotations: 39233 40718 +1435 +3.65
Annotation by Direct Experiment
MGI Curated Mouse Genes 12170 tba tba tba
Annotation by Orthology
Total Genes Annotated by Orthology ????? 3484 tba tba
Total Orthology Annotation ???? 9346 tba tba
Annotation by PomBase ????? 9134 tba tba
Annotation by GOA-UniProt ???? 128 tba tba
Annotation by GOC ???? 4 tba tba
IEA Annotation
Total Annotations: 5342 4290 tba tba