PomBase December 2015
PomBase, December 2015
PomBase is the Model Organism Database for the fission yeast Schizosaccharomyces pombe (www.pombase.org)
1. Staff working on GOC tasks
PomBase GO curators: Valerie Wood, Midori Harris, Antonia Lock
Developers associated with GO related projects at PomBase: online curation tool, pipelines, Website, automated QC, QUery tools: Mark McDowall, Kim Rutherford
NO STAFF FUNDED BY GO OR GOC gGRANTS
2. Annotation progress
| Annotation Type | Dec 2014 | Dec 5, 2015 | Change | % change |
|---|---|---|---|---|
| Total Number of Genes: * Nos from 2014 are protein coding only | 5052* | 5451 | n/a | n/a |
| Total Genes with at least one (non root) GO | ????? | 5289 | n/a | n/a |
| Total Genes with at least one (non root) BP | 4316* | 4668 | n/a | n/a |
| Total Genes with at least one (non root) CC | 4894* | 5191 | n/a | n/a |
| Total Genes with at least one (non root) MF | 3682* | 3958 | n/a | n/a |
| Total Annotations: | 39233 | 40718 | +1435 | +3.65 |
| Annotation by Direct Experiment | ||||
| Total genes curated by experiment | ???? | ??? | tba | tba |
| Total genes curated by experiment | ???? | ??? | tba | tba |
| Annotation by Orthology | ||||
| Total Genes Annotated by Orthology | ????? | 3484 | tba | tba |
| Total Orthology Annotation | ???? | 9346 | tba | tba |
| Annotation by PomBase | ????? | 9134 | tba | tba |
| Annotation by GOA-UniProt | ???? | 128 | tba | tba |
| Annotation by GOC | ???? | 4 | tba | tba |
| IEA Annotation | ||||
| Total Annotations: | 5342 | 4290 | tba | tba |