Difference between revisions of "Procedure for filling Genome-Specific spreadsheets (Retired)"

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m (New page: # Copy and paste the latest month's list of genes onto your genome specific spreadsheet Master list is found here: [http://spreadsheets.google.com/ccc?key=pwOksMOra5uq4vIYjPgefPw Reference...)
 
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# Copy and paste the latest month's list of genes onto your genome specific spreadsheet
[[Category:PAINT Archived]]
Master list is found here: [http://spreadsheets.google.com/ccc?key=pwOksMOra5uq4vIYjPgefPw Reference Genome Target Genes]
#Copy and paste the latest month's list of genes onto your genome specific spreadsheet. The Master list is found here: [http://spreadsheets.google.com/ccc?key=pwOksMOra5uq4vIYjPgefPw Reference Genome Target Genes]Links to individual spreadsheets are found in a worksheet of the above document.
Links to individual spreadsheets are found in a worksheet of the above document
#Use YOGY, or another tool to find the putative ortholog for each gene.  
# Use YOGY, or another tool to find the putative ortholog for each gene.  
#Enter the unique ID referring to the gene in your MOD. * if there is more than one ortholog, create a new line for each. * if there is no ortholog, enter 'no ortholog' and the date the assessment was made
# Enter the unique ID referring to the gene in your MOD
#When you are satisfied that the annotations reflect the gene's known function, biological role and cellular component, enter the 'date comprehensively annotated'  
* if there is more than one ortholog, create a new line for each.
#You can add a column with notes at the end (very right) of the spreadsheet
* if there is no ortholog, enter 'no ortholog' and the date the assessment was made
# Curate the gene 'comprehensively'. When you are satisfied that the annotations reflect the gene's known function, biological role and cellular component, enter the 'date comprehensively annotated'  
# You can add a column with notes at the end (very right) of the spreadsheet

Latest revision as of 11:33, 12 April 2019

  1. Copy and paste the latest month's list of genes onto your genome specific spreadsheet. The Master list is found here: Reference Genome Target Genes. Links to individual spreadsheets are found in a worksheet of the above document.
  2. Use YOGY, or another tool to find the putative ortholog for each gene.
  3. Enter the unique ID referring to the gene in your MOD. * if there is more than one ortholog, create a new line for each. * if there is no ortholog, enter 'no ortholog' and the date the assessment was made
  4. When you are satisfied that the annotations reflect the gene's known function, biological role and cellular component, enter the 'date comprehensively annotated'
  5. You can add a column with notes at the end (very right) of the spreadsheet