Procedure for filling Genome-Specific spreadsheets (Retired): Difference between revisions
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Master list is found here: [http://spreadsheets.google.com/ccc?key=pwOksMOra5uq4vIYjPgefPw Reference Genome Target Genes]. Links to individual spreadsheets are found in a worksheet of the above document. | Master list is found here: [http://spreadsheets.google.com/ccc?key=pwOksMOra5uq4vIYjPgefPw Reference Genome Target Genes]. Links to individual spreadsheets are found in a worksheet of the above document. | ||
# Use YOGY, or another tool to find the putative ortholog for each gene. | # Use YOGY, or another tool to find the putative ortholog for each gene. | ||
# Enter the unique ID referring to the gene in your MOD | # Enter the unique ID referring to the gene in your MOD | ||
* if there is more than one ortholog, create a new line for each. | * if there is more than one ortholog, create a new line for each. | ||
* if there is no ortholog, enter 'no ortholog' and the date the assessment was made | * if there is no ortholog, enter 'no ortholog' and the date the assessment was made | ||
# Curate the gene 'comprehensively'. When you are satisfied that the annotations reflect the gene's known function, biological role and cellular component, enter the 'date comprehensively annotated' | # Curate the gene 'comprehensively'. When you are satisfied that the annotations reflect the gene's known function, biological role and cellular component, enter the 'date comprehensively annotated' | ||
# You can add a column with notes at the end (very right) of the spreadsheet | # You can add a column with notes at the end (very right) of the spreadsheet |
Revision as of 10:32, 8 November 2007
- Copy and paste the latest month's list of genes onto your genome specific spreadsheet
Master list is found here: Reference Genome Target Genes. Links to individual spreadsheets are found in a worksheet of the above document.
- Use YOGY, or another tool to find the putative ortholog for each gene.
- Enter the unique ID referring to the gene in your MOD
* if there is more than one ortholog, create a new line for each. * if there is no ortholog, enter 'no ortholog' and the date the assessment was made
- Curate the gene 'comprehensively'. When you are satisfied that the annotations reflect the gene's known function, biological role and cellular component, enter the 'date comprehensively annotated'
- You can add a column with notes at the end (very right) of the spreadsheet