Procedure for selection of target genes (Retired): Difference between revisions

From GO Wiki
Jump to navigation Jump to search
Line 8: Line 8:
* [http://www.ncbi.nlm.nih.gov/Omim/getmorbid.cgi OMIM Morbid Map]
* [http://www.ncbi.nlm.nih.gov/Omim/getmorbid.cgi OMIM Morbid Map]
* [http://rgd.mcw.edu/dportal/ RGD disease portal]
* [http://rgd.mcw.edu/dportal/ RGD disease portal]
* [http://www.genetests.org Gene Tests]
* [http://www.pharmgkb.org/index.jsp PharmGKB]
* [http://www.pharmgkb.org/index.jsp PharmGKB]
* [http://www.ogic.ca/projects/g2d_2/ G2D]
* [http://www.ogic.ca/projects/g2d_2/ G2D]

Revision as of 16:01, 17 October 2007

Guidelines

  1. Try to select related genes (same pathway, same disease)
  2. Check that the gene is not already done (easiest to search by UniProt ID)
  3. Enter all ID in the Master Table
  4. For disease genes, enter the OMIM ID of the disease or a PMID of a paper describing the gene's implication in a disease

Disease genes

Conserved Human-E.coli

  • list of genes is in the 'Suggestions' spreadsheet (look for the "conserved Hs-Ec" sheet)
  • enter the ensemble ID in YOGY
  • find the UniProt ID from the YOGY summary tables
  • check the 'master list' to make sure the gene has not previously been selected

Bleeding edge genes

Biochemical/signaling pathways

Try picking 5 genes form the same pathway