Projects stand up meeting 2021-03-17: Difference between revisions
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==Attendees== | ==Attendees== | ||
* Present: | * Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris + Peter, Dustin | ||
* Regrets: | * Regrets: | ||
* Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris | * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris | ||
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==GAF2.2 migration status== | ==GAF2.2 migration status== | ||
* [https://docs.google.com/document/d/1RVP5sStGtCU9KxMgm-T4JqMyVJVUX1-X-hRwX1SuNm0 "Stand-up meeting agendas] | * [https://docs.google.com/document/d/1RVP5sStGtCU9KxMgm-T4JqMyVJVUX1-X-hRwX1SuNm0 "Stand-up" meeting agendas] | ||
* Rules status: | * Rules status: | ||
** Convert GAF2.1 and older versions to GAF2.2: https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000059.md | ** Convert GAF2.1 and older versions to GAF2.2: https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000059.md | ||
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** convert to GAF2.2: Need to check how that would impact our data consumers | ** convert to GAF2.2: Need to check how that would impact our data consumers | ||
** integrate inferences into GAF2.2 file we produce (and stop producing separate inference files?) | ** integrate inferences into GAF2.2 file we produce (and stop producing separate inference files?) | ||
* Latest snapshot release is from Tuesday, March 16th - David, Kimberly need to QC | |||
** MGI need to round-trip to complete QC check? | |||
* David, Kimberly will QC; aim to meet Tuesday, March 23rd to green light March release | |||
==Pathways2GO manuscript== | ==Pathways2GO manuscript== | ||
==MGI, WB, ZFIN loads== | ==MGI, WB, ZFIN loads== | ||
* MGI | |||
** loosing some annotations - Dustin to fix the script to make sure metadata (comments) is loaded | |||
** regulation of biological quality annotations not being loaded. Dustin will query and send a report. About 60 annotations missing | |||
-> MGI is very close from being finished. | |||
-> MGI will have a 'drop and reload' mechanism | |||
-> Next 'project' is for GOC to turn MGI GPAD files from ttl back into GPAD | |||
create GPAD files for MGI to be able to import them | |||
* For eg issue with 'located_in' -> Noctua doesn't use the relations from our latest specs. | |||
* WB needs to do some more work with Alex and the P2GO file - will do together with SGD to be making most efficient use of Alex's time | |||
** SGD decided history is not quite as important as they thought it was initially | |||
** GPAD files still have a few bugs | |||
* ZFIN essentially done, the plug has been pulled | |||
==ART1.0/Noctua3.0 plan== | ==ART1.0/Noctua3.0 plan== | ||
Latest revision as of 12:03, 17 March 2021
Attendees
- Present: David, Kimberly, Pascale, Seth, Suzi, Paul, Chris + Peter, Dustin
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris
Projects presentation
Template:
- Next deliverables + expected date
- Progress
- Issues / blockers
March GO release
Depends on GAF2.2 migration
GAF2.2 migration status
- "Stand-up" meeting agendas
- Rules status:
- Convert GAF2.1 and older versions to GAF2.2: https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000059.md
- Check allowed relations for GAF2.2: https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000061.md
- Inferences are still in GAF2.1: Options:
- convert to GAF2.2: Need to check how that would impact our data consumers
- integrate inferences into GAF2.2 file we produce (and stop producing separate inference files?)
- Latest snapshot release is from Tuesday, March 16th - David, Kimberly need to QC
- MGI need to round-trip to complete QC check?
- David, Kimberly will QC; aim to meet Tuesday, March 23rd to green light March release
Pathways2GO manuscript
MGI, WB, ZFIN loads
- MGI
- loosing some annotations - Dustin to fix the script to make sure metadata (comments) is loaded
- regulation of biological quality annotations not being loaded. Dustin will query and send a report. About 60 annotations missing
-> MGI is very close from being finished. -> MGI will have a 'drop and reload' mechanism -> Next 'project' is for GOC to turn MGI GPAD files from ttl back into GPAD create GPAD files for MGI to be able to import them
- For eg issue with 'located_in' -> Noctua doesn't use the relations from our latest specs.
- WB needs to do some more work with Alex and the P2GO file - will do together with SGD to be making most efficient use of Alex's time
- SGD decided history is not quite as important as they thought it was initially
- GPAD files still have a few bugs
- ZFIN essentially done, the plug has been pulled
ART1.0/Noctua3.0 plan
Any other ongoing project
Next sprint
https://docs.google.com/document/d/1AIuq8xxgV6bZZHFbXW-s3ln8PdUfZGNUuZcNFX1n7eQ/edit#