Projects stand up meeting 2021-03-31: Difference between revisions
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* Release of ART and Noctua form to Noctua (currently on dev only) | * Release of ART and Noctua form to Noctua (currently on dev only) | ||
* Model copy: remaining issues | * Model copy: remaining issues | ||
** [https://docs.google.com/document/d/1qG-6XhQQw4mnzp74HZDI4oW7PWSa1oVioPpq4bQ1XFA User Stories] | |||
* Annotating protein chains (UniProt): how to get the GPI we need | * Annotating protein chains (UniProt): how to get the GPI we need | ||
Latest revision as of 11:51, 31 March 2021
Attendees
- Present: Chris, David, Huaiyu, Judy, Kimberly, Paul, Seth, Suzi
- Regrets:
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris
Announcements
- Pascale off this week; Kimberly off next week
GOC meeting
- In about 1 month: do we have anything specific we want to deliver?
- Should we start devoting more of these calls to the meeting agenda?
Projects presentation
Template:
- Next deliverables + expected date
- Progress
- Issues / blockers
March GO release/GAF2.2 migration
Status
- David and Kimberly checked latest pipeline run with Noctua GPADs run through go rules
- Some changes were needed after the initial run to update file names so consuming groups' pipelines didn't need to be changed
- Most everything looks okay on the GO side (one question about repaired annotations and order of operations for updating gp2term relations)
- David would like to check MGI round trip on Monday; if all goes well and there are no other issues, we could have a versioned release next week? Or do we want to release this week?
- Kimberly would still like to do a lessons learned debriefing with everyone involved in this project - on a manager's call or a separate call
COVID19 Disease Map Presentation
- COVID19 Disease Map consortium would like us to present at their Friday meeting on April 16th
- Patrick Masson has created SARS-COV-2 GO-CAM models
- Meet (at least) once before the April 16th meeting to briefly discuss what we want to convey?
MGI, WB, ZFIN, SGD import
- Status of import files
- Status of emitted GPAD files
- gpad diff tool
- Would like more discussion on the intended scope and usage of a gpad diff tool
- There may be slightly different requirements for Zfin vs MGI vs WB vs other groups
- Try to write one diff script to rule them all upfront or iterate as needed?
- Given the answer to the above question, where does this work fit into our current project priorities?
- gpad diff tool
- ACTION: Specs need to be added here: https://github.com/geneontology/go-annotation/issues/3687
Chris will do a first pass
Missing file from SVN
2 helpdesk emails (including Paul Pavlidis) request: http://release.geneontology.org/latest-termdb/go_daily-termdb.rdf-xml.gz see https://github.com/geneontology/helpdesk/issues/302 What was this file? Should we try to restore it?
PAINT Annotation Files and Identifiers
- Identifiers in PAINT GAFs are causing some issues
ART1.0/Noctua3.0 plan
Any other ongoing project
Subsets creation documentation
https://docs.google.com/document/d/1mh-xrwAWGqOeviNsJxQ1m619uL4lgrRggYO6msntQpk/edit?ts=605a3373
Nearly finished projects
- Release of ART and Noctua form to Noctua (currently on dev only)
- Model copy: remaining issues
- Annotating protein chains (UniProt): how to get the GPI we need
Next sprint
https://docs.google.com/document/d/1AIuq8xxgV6bZZHFbXW-s3ln8PdUfZGNUuZcNFX1n7eQ/edit#