Projects stand up meeting 2021-06-16

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Attendees

  • Present:
  • Regrets:
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris

Announcements

Discussion points

User stories / use cases

A user requests annotations for Chlorocebus sabaeus (Vervet - green monkey) in a .gaf (gzip) format (Helpdesk ticket: https://github.com/geneontology/helpdesk/issues/319). This is certainly something GO users expect we can deliver.

  • Issues:
    • We dont have IEAs, and anyway our plan was to fully load annotations from 142 species, and none from other species. Do we have any guidelines for this specific use case? Do we direct users to GOA? Can we set up a special API call to QuickGO?
    • Alternatively, could we generate files (even if only once a year) for many species, without them being in the 'main pipeline', but so that people could get data for their analyses ?
    • This might include Tree Grafter data, as this seems non-trivial to ask users to run this themselves

Release delays

Some delays are caused by upstream sources, and groups cannot always give a new file quickly. Is there a date in the month at which we should decide to go ahead with the release, and use the last correct file for that upstream?


Data load frequency in Noctua

Updates are infrequent in Noctua, especially for GO terms it would be very useful for curators to have more frequent data loads.

Ongoing projects

MOD imports

Pipeline

Priorities

https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648

GOC meeting Action Points

action items

  • Are any of these items high priority?