Projects stand up meeting 2021-06-30: Difference between revisions
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==Attendees== | ==Attendees== | ||
* Present: | * Present: David, Kimberly, Pascale, Seth, Suzi, Paul + Tanya | ||
* Regrets: | * Regrets: Chris | ||
* Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris | * Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris | ||
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https://github.com/geneontology/go-ontology/issues/21642 | https://github.com/geneontology/go-ontology/issues/21642 | ||
What is the priority on this? | What is the priority on this? | ||
-> Likely fixed, Pascale needs to check snapshot | |||
==TAIR - data load question== | |||
* To be discussed in the second part of the call | |||
* Title: Multi-omics network-based functional annotation of unknown Arabidopsis genes (link to draft manuscript here - please keep confidential) "we developed a novel automated function prediction (AFP) algorithm(...) Next, we predicted biological process annotations for known and unknown genes in A. thaliana and validated our predictions using experimental protein-DNA and protein-protein interaction data (...) | |||
=Ongoing projects= | =Ongoing projects= | ||
==Urgent bug== | |||
NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 | |||
Jim needed to help fix this | |||
==MOD imports== | ==MOD imports== | ||
* [https://github.com/orgs/geneontology/projects/52 GPAD output] | * [https://github.com/orgs/geneontology/projects/52 GPAD output] | ||
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra | |||
---- | |||
==Topics reported to next week== | |||
* [https://github.com/orgs/geneontology/projects/58 MGI] | * [https://github.com/orgs/geneontology/projects/58 MGI] | ||
* [https://github.com/orgs/geneontology/projects/59 WormBase] | * [https://github.com/orgs/geneontology/projects/59 WormBase] | ||
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==Ontology== | ==Ontology== | ||
* | * [https://github.com/orgs/geneontology/projects/64 ATPase jamboree ] | ||
* Next: GO-Rhea alignment - week of July 26 | * Next: GO-Rhea alignment - week of July 26 | ||
** Participants: | ** Participants: | ||
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==Priorities== | ==Priorities== | ||
* GPAD project | |||
* NEO | |||
https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648 | https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648 | ||
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[[Category: GO Managers Meetings]] | [[Category: GO Managers Meetings]] |
Latest revision as of 14:51, 30 June 2021
Attendees
- Present: David, Kimberly, Pascale, Seth, Suzi, Paul + Tanya
- Regrets: Chris
- Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
Announcements
GOC meeting dates: Oct 13-15 (Wed to Friday) - Announcement was emailed to go-consortium 2 weeks ago
Discussion points
Taxon constraints not filtering errors: https://github.com/geneontology/go-ontology/issues/21642 What is the priority on this?
-> Likely fixed, Pascale needs to check snapshot
TAIR - data load question
- To be discussed in the second part of the call
- Title: Multi-omics network-based functional annotation of unknown Arabidopsis genes (link to draft manuscript here - please keep confidential) "we developed a novel automated function prediction (AFP) algorithm(...) Next, we predicted biological process annotations for known and unknown genes in A. thaliana and validated our predictions using experimental protein-DNA and protein-protein interaction data (...)
Ongoing projects
Urgent bug
NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 Jim needed to help fix this
MOD imports
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra
Topics reported to next week
Ontology
- ATPase jamboree
- Next: GO-Rhea alignment - week of July 26
- Participants:
GAF2.2 Migration
- Can we close this project?
- Are all GO upstreams in compliance?
- https://github.com/orgs/geneontology/projects/51
Priorities
- GPAD project
- NEO
GOC meeting Action Points
- Are any of these items high priority?