Projects stand up meeting 2021-06-30: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
mNo edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
==Attendees==
==Attendees==
* Present:  
* Present: David, Kimberly, Pascale, Seth, Suzi, Paul + Tanya
* Regrets:  
* Regrets: Chris
* Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris
* Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris


Line 11: Line 11:
https://github.com/geneontology/go-ontology/issues/21642
https://github.com/geneontology/go-ontology/issues/21642
What is the priority on this?
What is the priority on this?
-> Likely fixed, Pascale needs to check snapshot
==TAIR - data load question==
* To be discussed in the second part of the call
* Title: Multi-omics network-based functional annotation of unknown Arabidopsis genes (link to draft manuscript here - please keep confidential) "we developed a novel automated function prediction (AFP) algorithm(...) Next, we predicted biological process annotations for known and unknown genes in A. thaliana and validated our predictions using experimental protein-DNA and protein-protein interaction data (...)


=Ongoing projects=
=Ongoing projects=
==Urgent bug==
NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70
Jim needed to help fix this
==MOD imports==
==MOD imports==
* [https://github.com/orgs/geneontology/projects/52 GPAD output]
* [https://github.com/orgs/geneontology/projects/52 GPAD output]
Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra
----
==Topics reported to next week==
* [https://github.com/orgs/geneontology/projects/58 MGI]
* [https://github.com/orgs/geneontology/projects/58 MGI]
* [https://github.com/orgs/geneontology/projects/59 WormBase]
* [https://github.com/orgs/geneontology/projects/59 WormBase]
Line 21: Line 42:


==Ontology==
==Ontology==
* Last week/ongoing [https://github.com/orgs/geneontology/projects/64 ATPase jamboree ]
* [https://github.com/orgs/geneontology/projects/64 ATPase jamboree ]
* Next: GO-Rhea alignment - week of July 26
* Next: GO-Rhea alignment - week of July 26
** Participants:
** Participants:
Line 31: Line 52:


==Priorities==
==Priorities==
* GPAD project
* NEO


https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648
https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648
Line 39: Line 62:




==TAIR - data load question==
* To be discussed in the second part of the call
* Title: Multi-omics network-based functional annotation of unknown Arabidopsis genes (link to draft manuscript here - please keep confidential) "we developed a novel automated function prediction (AFP) algorithm(...) Next, we predicted biological process annotations for known and unknown genes in A. thaliana and validated our predictions using experimental protein-DNA and protein-protein interaction data (...)


[[Category: GO Managers Meetings]]
[[Category: GO Managers Meetings]]

Latest revision as of 14:51, 30 June 2021

Attendees

  • Present: David, Kimberly, Pascale, Seth, Suzi, Paul + Tanya
  • Regrets: Chris
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris

Announcements

GOC meeting dates: Oct 13-15 (Wed to Friday) - Announcement was emailed to go-consortium 2 weeks ago

Discussion points

Taxon constraints not filtering errors: https://github.com/geneontology/go-ontology/issues/21642 What is the priority on this?

-> Likely fixed, Pascale needs to check snapshot

TAIR - data load question

  • To be discussed in the second part of the call
  • Title: Multi-omics network-based functional annotation of unknown Arabidopsis genes (link to draft manuscript here - please keep confidential) "we developed a novel automated function prediction (AFP) algorithm(...) Next, we predicted biological process annotations for known and unknown genes in A. thaliana and validated our predictions using experimental protein-DNA and protein-protein interaction data (...)



Ongoing projects

Urgent bug

NEO - not loading all MGI entities: https://github.com/geneontology/neo/issues/70 Jim needed to help fix this

MOD imports

Kimberly and David described tasks - not all tickets are assigned yet; need Jim and probably Sierra



Topics reported to next week

Ontology

GAF2.2 Migration

Priorities

  • GPAD project
  • NEO

https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=68094648

GOC meeting Action Points

action items

  • Are any of these items high priority?