Projects stand up meeting 2021-10-27

Attendees

• Present:
• Regrets:
• Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris

Announcements

Discussion points

Priorities & objectives for remainder of 2021

Noctua

• • Technical
    • Wrap up outstanding curator request tickets
    • Implement annotation and model copy
    • Clean up bad or incorrect data
  • Documentation/Guidelines
    • Annotation extension usage
    • Process-specific guidelines
      • Signaling pathways
      • Metabolism
      • Gene expression

MOD imports

• • Import annotation sets from Protein2GO (SGD and WB)
  • Resolve outstanding GPAD output issues
  • Put WB fully into production?
  • Create roadmap for annotation data exchange amongst all relevant resources

Ontology

• • Boomer + Reports by Anne: errors in GO-RHEA mappings
  • ChEBI Roles
  • Taxon constraints:
    • Some terms need logical definitions
    • usage of occurs_in for inferences would add a number of constraints
  • Other projects
    • transcription:
      • epigenetic processes, miRNA, and related
      • biological processes
    • multiorganism processes:
      • remove MF in BP (modulation of host x activity)
      • fix high level terms to make browsing more logical
    • Obsolete single step processes
    • Implement design patterns

Taxon constraints

• etc

GOC meeting follow up

• Summary metrics workshop: https://docs.google.com/document/d/15tBWdDNQuw9IdfDKk0pxpuDjfrnW3vT-xKnwO8_c1D0/edit#
• Summary subsets workshop
• Implementation documentation workshop suggestions

Clean up Google drive, calendar, and GH to remove part project members

https://github.com/orgs/geneontology/people

Asynchrony issues in the release pipeline

https://github.com/geneontology/go-site/issues/1742

Other priorities

https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=1697332900