Projects stand up meeting 2021-10-27

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Attendees

  • Present:
  • Regrets:
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris

Announcements

Discussion points

Priorities & objectives for remainder of 2021

API redesign

  • Right now we have multiple little APIs all over the place.
  • Main GO API, Noctua API and xx
  1.  Modernize API
  2.  Integrate GO-CAM API

Technical debt / refactoring

Noctua

  • Technical
    • Wrap up outstanding curator request tickets in current project
    • Implement annotation and model copy
    • Clean up bad or incorrect data
  • Documentation/Guidelines
    • Annotation extension usage
    • Process-specific guidelines
      • Signaling pathways
      • Metabolism
      • Gene expression

MOD imports

    • Import annotation sets from Protein2GO (SGD and WB)
    • Resolve outstanding GPAD output issues
    • Put WB fully into production?
    • Create roadmap for annotation data exchange amongst all relevant resources

Ontology

    • Boomer + Reports by Anne: errors in GO-RHEA mappings
    • ChEBI Roles
    • Taxon constraints:
      • Some terms need logical definitions
      • usage of occurs_in for inferences would add a number of constraints
    • Other projects
      • transcription:
        • epigenetic processes, miRNA, and related
        • biological processes
      • multiorganism processes:
        • remove MF in BP (modulation of host x activity)
        • fix high level terms to make browsing more logical
      • Obsolete single step processes
      • Implement design patterns

Reactome2GO

ECO-GO alignment

PAINT

Taxon constraints

  • etc

GOC meeting follow up

Project updates

Clean up Google drive, calendar, and GH to remove part project members

https://github.com/orgs/geneontology/people

Asynchrony issues in the release pipeline

https://github.com/geneontology/go-site/issues/1742

Other priorities

https://docs.google.com/spreadsheets/d/19-i43w0mGQdFYmKXqskVIgrDO-pVTWo1YgjaWa5PI1o/edit#gid=1697332900