Projects update meeting 2022-03-16
Attendees
- Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
- Present: David, Kimberly, Pascale, Seth, Suzi, Chris, Paul
- Regrets:
Announcements
- Moving the GO google drive
- Preparing GOC meeting
Projects updates
Finalize AmiGO default relation change (Aim 3)
Should be completed with the (Feb) March release: AmiGO default relation GH project
NEO load of new sequences
Status and next steps: NEO load GH project
Simple version of automation of Noctua updates (planned)
Are the specs finalized? Noctua updates
Moving the wiki
Seth
Noctua Training
David
Review current work
Follow up from last meeting
Noctua Visual Editor
- Visual Pathway editor GH project
- Status & next steps
Noctua Updates
- https://github.com/orgs/geneontology/projects/65
- Plan is to merge next week (week of 2022-03-07)
- New project (smaller) should be created for next work.
- Plan a date for the review of the next project (scope definition)
Model copy
- PLANNED Old Shallow Model Copy GH project
- Specs finalized? Plan was to finalize on 2022-03-03 Technical call
- Need to plan a start date and a review date
Status Automated Ontology Updates in Noctua/Minerva
- https://github.com/orgs/geneontology/projects/87
- Specs finalized?
- Resources attributed?
- Need to plan a review date
New tasks/Projects
- Move all SheX compliant relations to the form, even if some will be changed later (Kimberly, Tremayne): project or ticket in next Noctua improvements?
- Google drive move (Pascale, Suzi, others later) -- CAN WE DISCUSS THIS FIRST?? https://github.com/geneontology/go-site/issues/1813
- Annotation documentation (Pascale, Patrick, others later)
Currently active projects:
Project name | Link to GH project | Resources: PI, PO, TL, Other resources | Next review | Follow up review | Aligned with Matrix? | Notes |
---|---|---|---|---|---|---|
Software improvement | ||||||
Finalize AmiGO default relation change (Aim 3) | AmiGO default relation GH project | PI: Chris, PO:Chris, TL: Seth, Others: Seth | 2022-03-16 | Yes | To review and close after the next release | |
Software improvements (to prioritize between API or pipeline) ++ Seth: specify (Seth would like to remove unneeded code) | PLANNING Pipeline cleanup & PLANNING GO API | PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay? | (Spec reviewed 2022-02-23) | Needs to be better specified | ||
Alliance software support | Alliance software support | PI: , PO:??, TL: Seth, Others: | No | |||
Noctua improvement and maintenance | Noctua 2021 & Noctua 2020 | PI: Paul , PO: Kimberly, TL: Seth, Others: Tremayne, Jim | No | |||
Ongoing data QC and pipeline maintenance | Ongoing data QC and pipeline maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Not applicable | |||
Essential software maintenance | Essential software maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Not applicable | ||
Remove some main roadblocks for GO-CAM models curation (Aim 2) | ||||||
NEO load of new sequences | NEO load GH project | PI: Chris, PO: Pascale , TL:, Seth Others: Sujay | 2022-03-16 | Yes | ||
New visual editor (Tremayne) -> ready to push to Noctua dev? | Visual Pathway editor GH project | PI: Paul, PO: Paul, TL:, Others: Tremayne | 2022-03-02 | Yes | Software call: OK to move to development; Need to define plan for next phase: testing, which bugs/features need to be fixed/added. Needs a more "formal" tech doc (as opposed to the current user-oriented one). | |
Model copy | PLANNED Old Shallow Model Copy GH project | PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne | 2022-03-02 - Review specs | No - was supposed to be Feb | ||
Noctua output | GPAD output | PI: Chris, PO: Kimberly, TL:?, Others: Jim | 2022-03-30 - Review specs | +/- : Planned for March, but project not yet defined or resourced | ||
Simple version of automation of Noctua updates (planned) | Noctua updates | PI: Chris, PO: TBD, TL: Seth, Others: | 2022-03-16 - Review specs | No | ||
Complete MOD imports (Aim 2) | ||||||
Define specific remaining tasks for MOD imports + choose priorities for this period | To be created - MGI - WB - SGD | PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin | 2022-03-23 | No | ||
Annotation Extension Relation Review | Annotation Extension Relation Review | PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale | ||||
Integrate YeastPathways in GO Cam | Yeast Pathways | PI: Paul, PO: , TL: Dustin, Others: | No | |||
Ontology (Aim 1) | ||||||
Phylogenetic taxon constraints | TC GH project - ontology repo | PI: Paul, PO: Pascale, TL: Jim, Others: | 2022-04-20 | Yes | ||
Outreach/usability (Aim 3) | ||||||
Switch to “species” for download outputs | PLANNED Improved Downloads ???? | PI: , PO:, TL:, Others: | 2022-03-23 - Review specs | No | ||
Outreach - collect teaching materials in Google drive? | PI: Mike , PO: Suzi, TL:, Others: | 2022-04-xx before the GOC meeting | No | |||
Noctua training material | Noctua training Project | PI: Mike , PO: Suzi, TL: NA, Others: David | 2022-04-xx before the GOC meeting | No | ||
Other projects | ||||||