Projects update meeting 2022-03-23: Difference between revisions

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(Created page with "= Attendees = * Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia * Present: * Regrets: =Announcements= * Preparing GOC meeting: start planning th...")
 
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| [https://github.com/orgs/geneontology/projects/68 AmiGO default relation GH project]
| [https://github.com/orgs/geneontology/projects/68 AmiGO default relation GH project]
| '''PI:''' Chris, '''PO:'''Chris, '''TL:''' Seth, '''Others:''' Seth
| '''PI:''' Chris, '''PO:'''Chris, '''TL:''' Seth, '''Others:''' Seth
| 2022-03-16
| 2022-03-30
|  
|  
| Yes
| Yes
| To review and close after the next release
| To review and close after the next release. Webpage on relations need improvement (Chris, Pascale)
|-
|-
|  Software improvements (to prioritize between API or pipeline) ++ Seth: specify (Seth would like to remove unneeded code)
|  Software improvements (to prioritize between API or pipeline) ++ Seth: specify (Seth would like to remove unneeded code)
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| [https://github.com/orgs/geneontology/projects/79 NEO load GH project]
| [https://github.com/orgs/geneontology/projects/79 NEO load GH project]
| '''PI: Chris''', '''PO:''' Pascale ''', TL:''', Seth '''Others:''' Sujay
| '''PI: Chris''', '''PO:''' Pascale ''', TL:''', Seth '''Others:''' Sujay
| 2022-03-16
| 2022-03-30
|  
|  
| Yes
| Yes
|
| Seth will look into a strategy - week of March 16th
|-
|-
|  New visual editor (Tremayne) -> ready to push to Noctua dev?  
|  New visual editor (Tremayne) -> ready to push to Noctua dev?  
| [https://github.com/orgs/geneontology/projects/84 Visual Pathway editor GH project]
| [https://github.com/orgs/geneontology/projects/84 Visual Pathway editor GH project]
| '''PI:''' Paul, '''PO:''' Paul, '''TL:''', '''Others:''' Tremayne
| '''PI:''' Paul, '''PO:''' Paul, '''TL:''', '''Others:''' Tremayne
| 2022-03-02
| 2022-03-23
|  
|  
| Yes
| Yes
| Software call: OK to move to development; Need to define plan for next phase: testing, which bugs/features need to be fixed/added. <i>Needs a more "formal" tech doc (as opposed to the current user-oriented one).</i>
| Ready for release to prod?
|-
|-
| Model copy
| Model copy
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| [https://github.com/orgs/geneontology/projects/87 Noctua updates]
| [https://github.com/orgs/geneontology/projects/87 Noctua updates]
| '''PI: ''' Chris, '''PO:''' TBD, '''TL:''' Seth, '''Others:'''
| '''PI: ''' Chris, '''PO:''' TBD, '''TL:''' Seth, '''Others:'''
| 2022-03-16 -  Review specs
| 2022-03-30 -  Review status
|  
|  
| No
| Yes
|
|
|-
|-

Revision as of 13:14, 16 March 2022

Attendees

  • Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
  • Present:
  • Regrets:

Announcements

  • Preparing GOC meeting: start planning the agenda

Currently active projects:

Project name Link to GH project Resources: PI, PO, TL, Other resources Next review Follow up review Aligned with Matrix? Notes
Software improvement
Finalize AmiGO default relation change (Aim 3) AmiGO default relation GH project PI: Chris, PO:Chris, TL: Seth, Others: Seth 2022-03-30 Yes To review and close after the next release. Webpage on relations need improvement (Chris, Pascale)
Software improvements (to prioritize between API or pipeline) ++ Seth: specify (Seth would like to remove unneeded code) PLANNING Pipeline cleanup & PLANNING GO API PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay? (Spec reviewed 2022-02-23) Needs to be better specified
Alliance software support Alliance software support PI: , PO:??, TL: Seth, Others: No
Noctua improvement and maintenance Noctua 2021 & Noctua 2020 PI: Paul , PO: Kimberly, TL: Seth, Others: Tremayne, Jim No
Ongoing data QC and pipeline maintenance Ongoing data QC and pipeline maintenance PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? Not applicable
Essential software maintenance Essential software maintenance PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? Ad hoc if there is a big bug Not applicable
Remove some main roadblocks for GO-CAM models curation (Aim 2)
NEO load of new sequences NEO load GH project PI: Chris, PO: Pascale , TL:, Seth Others: Sujay 2022-03-30 Yes Seth will look into a strategy - week of March 16th
New visual editor (Tremayne) -> ready to push to Noctua dev? Visual Pathway editor GH project PI: Paul, PO: Paul, TL:, Others: Tremayne 2022-03-23 Yes Ready for release to prod?
Model copy PLANNED Old Shallow Model Copy GH project PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne 2022-03-02 - Review specs No - was supposed to be Feb
Noctua output GPAD output PI: Chris, PO: Kimberly, TL:?, Others: Jim 2022-03-30 - Review specs +/- : Planned for March, but project not yet defined or resourced
Simple version of automation of Noctua updates (planned) Noctua updates PI: Chris, PO: TBD, TL: Seth, Others: 2022-03-30 - Review status Yes
Complete MOD imports (Aim 2)
Define specific remaining tasks for MOD imports + choose priorities for this period To be created - MGI - WB - SGD PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin 2022-03-23 No
Annotation Extension Relation Review Annotation Extension Relation Review PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale
Integrate YeastPathways in GO Cam Yeast Pathways PI: Paul, PO: , TL: Dustin, Others: No
Ontology (Aim 1)
Phylogenetic taxon constraints TC GH project - ontology repo PI: Paul, PO: Pascale, TL: Jim, Others: 2022-04-20 Yes
Outreach/usability (Aim 3)
Switch to “species” for download outputs PLANNED Improved Downloads ???? PI: , PO:, TL:, Others: 2022-03-23 - Review specs No
Outreach - collect teaching materials in Google drive? PI: Mike , PO: Suzi, TL:, Others: 2022-04-xx before the GOC meeting No
Noctua training material Noctua training Project PI: Mike , PO: Suzi, TL: NA, Others: David 2022-04-xx before the GOC meeting No
Other projects
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