Projects update meeting 2022-03-23: Difference between revisions
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** [https://github.com/orgs/geneontology/projects/65 Noctua 2021] | ** [https://github.com/orgs/geneontology/projects/65 Noctua 2021] | ||
** [https://github.com/orgs/geneontology/projects/46 Noctua 2020] | ** [https://github.com/orgs/geneontology/projects/46 Noctua 2020] | ||
===MOD imports=== | |||
Review projects, decide what's in scope | |||
===New visual editor=== | ===New visual editor=== | ||
Revision as of 10:05, 18 March 2022
Attendees
- Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
- Present:
- Regrets:
Announcements
- Preparing GOC meeting: start planning the agenda
Follow up from last meeting
- wiki move
- Google drive move
Project updates
Alliance software support
Seth Alliance software support
Noctua improvement and maintenance
- Status and next steps
MOD imports
Review projects, decide what's in scope
New visual editor
Ready to deploy?
QC & Pipeline and Essential software maintenance
Release last week (March 16th); anything to report?what resources are needed until the next release stats?
Update annotation documentation
Pascale -> would like to wait until the wiki and the G drive are moved
New projects to create
- Manager new users more actively (+ all contributing groups, in particular those not attending GOC and annotation calls)
Currently active projects
| Project name | Link to GH project | Resources: PI, PO, TL, Other resources | Next review | Follow up review | Aligned with Matrix? | Notes |
|---|---|---|---|---|---|---|
| Software improvement | ||||||
| Finalize AmiGO default relation change (Aim 3) | AmiGO default relation GH project | PI: Chris, PO:Chris, TL: Seth, Others: Seth | 2022-03-30 | Yes | To review and close after the next release. Webpage on relations need improvement (Chris, Pascale) | |
| Software improvements : GO API | GO API | PI: Chris, PO:??, TL: Seth, Others: Sierra | Review status 2022-04-20 | Yes | Will review at the end of April to see the status of the project | |
| Software improvements : pipeline cleanup | PLANNING Pipeline cleanup | PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay? | Review specs & scope 2022-04-20 | Yes | Planned for April | |
| Alliance software support | Alliance software support | PI: , PO:??, TL: Seth, Others: | 2022-03-23 | No | ||
| Noctua improvement and maintenance | Noctua 2021 & Noctua 2020 | PI: Paul , PO: Kimberly, TL: Seth, Others: Tremayne, Jim | 2022-03-23 | No | ||
| GO_REFs | GO_REFs | PI: Chris, PO: Chris, TL: Seth, Others: Sujay, some of Sierra | 2022-04-20 | Yes | ||
| Ongoing data QC and pipeline maintenance | Ongoing data QC and pipeline maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
| Essential software maintenance | Essential software maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
| Remove some main roadblocks for GO-CAM models curation (Aim 2) | ||||||
| NEO load of new sequences | NEO load GH project | PI: Chris, PO: Pascale , TL:, Seth Others: Sujay | 2022-03-30 | Yes | Seth will look into a strategy - week of March 16th | |
| New visual editor (Tremayne) -> ready to push to Noctua dev? | Visual Pathway editor GH project | PI: Paul, PO: Paul, TL:, Others: Tremayne | 2022-03-23 | Yes | Ready for release to prod? Present at March 22 annotation call | |
| Model copy | PLANNED Old Shallow Model Copy GH project | PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne | 2022-03-30 - Review status | Yes | Aim to present at GOC meeting (or announce work is ongoing) | |
| Noctua output | GPAD output | PI: Chris, PO: Kimberly, TL:?, Others: Jim | 2022-03-30 - Review specs | +/- : Planned for March, but project not yet defined or resourced | David will split into 3 projects: (1) GPAD for MOD imports (done); (2) remove redundancy in exports (high priority); (3) problems with complicated models | |
| Simple version of automation of Noctua updates (planned) | Noctua updates | PI: Chris, PO: TBD, TL: Seth, Others: | 2022-03-30 - Review status | Yes | ||
| Complete MOD imports (Aim 2) | ||||||
| Define specific remaining tasks for MOD imports + choose priorities for this period | To be created - MGI - WB - SGD | PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin | 2022-03-23 | No | ||
| Annotation Extension Relation Review | Annotation Extension Relation Review | PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale | ||||
| Integrate YeastPathways in GO Cam | Yeast Pathways | PI: Paul, PO: , TL: Dustin, Others: | No | |||
| Ontology (Aim 1) | ||||||
| Phylogenetic taxon constraints | TC GH project - ontology repo | PI: Paul, PO: Pascale, TL: Jim, Others: | 2022-04-20 | Yes | ||
| Outreach/usability (Aim 3) | ||||||
| Switch to “species” for download outputs | PLANNED Improved Downloads ???? | PI: , PO:, TL:, Others: | 2022-03-23 - Review specs | No | ||
| Outreach - collect teaching materials in Google drive? | PI: Mike , PO: Suzi, TL:, Others: | 2022-04-xx before the GOC meeting | No | |||
| Noctua training material | Noctua training Project | PI: Mike , PO: Suzi, TL: NA, Others: David | 2022-04-20 | Yes | After/around the ZFIN training session | |
| Other projects | ||||||