Projects update meeting 2022-04-06: Difference between revisions
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==Task Matrix== | ==Task Matrix== | ||
[https://docs.google.com/document/d/1r3aWGjyz2nXNpyzETPO-ah276HQDc1ClNs57Cm6Nwv0/edit Main tasks - Jan-July 2022] | [https://docs.google.com/document/d/1r3aWGjyz2nXNpyzETPO-ah276HQDc1ClNs57Cm6Nwv0/edit Main tasks - Jan-July 2022] | ||
Needs updating for April | |||
==Completed projects?== | ==Completed projects?== | ||
Revision as of 04:38, 1 April 2022
Attendees
- Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
- Present:
- Regrets:
Announcements
- Preparing GOC meeting: start planning the agenda: https://docs.google.com/document/d/1q1_OfUz-EZvw28WJhDnbuNUGFAZz-21-uynNybdJcqg/edit
- Fall meeting in Baltimore?
- Pascale off next week
Google drive move
- Google drive move
- Query owner:me in the 'LEGACY Gene Ontology -use Shared Drive' to make sure all files have been moved
- Looks like quite a few files are left https://drive.google.com/drive/search?q=parent:0B8kRPmmvPJU3dFhhcWhTSmlUcDA%20owner:
Project updates
Task Matrix
Main tasks - Jan-July 2022 Needs updating for April
Completed projects?
- MGI import into Noctua
- GO-CAM GPAD Output for MOD imported annotations OK CLOSED
- AmiGO default relation GH project
- Noctua 2021 & Noctua 2020
- Visual Pathway editor v1.0
- Simple version of Noctua updates
Project status
Ongoing data QC and pipeline maintenance
Anything to report? what resources are needed until the next release?
NEO load of Swiss-Prot reviewed entries
Blocking for Swiss-Prot curators to make models
Alliance software support
Need to define PI, deliverables, resource
Ontology single BP jamboree this week
Monday - Thursday
Shallow Model Copy
Currently active projects
| Project name | Link to GH project | Resources: PI, PO, TL, Other resources | Next review | Follow up review | Aligned with Matrix? | Notes |
|---|---|---|---|---|---|---|
| Software improvement | ||||||
| Finalize AmiGO default relation change (Aim 3) | AmiGO default relation GH project | PI: Chris, PO:Chris, TL: Seth, Others: Seth | 2022-04-06 Close? | Yes | To review and close after the next release. Webpage on relations need improvement (Chris, Pascale) | |
| Software improvements : GO API | GO API | PI: Chris, PO:??, TL: Seth, Others: Sierra | Review status 2022-04-20 | Yes | Will review at the end of April to see the status of the project | |
| Software improvements : pipeline cleanup | PLANNING Pipeline cleanup | PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay? | Review specs & scope 2022-04-20 | Yes | Planned for April | |
| Alliance software support | Alliance software support | PI: , PO:??, TL: Seth, Others: | 2022-04-06 | No | ||
| Noctua improvement and maintenance | Noctua 2021 & Noctua 2020 | PI: Paul , PO: Kimberly, TL: Seth, Others: Tremayne, Jim | 2022-04-05 Close? | No | ||
| GO_REFs | GO_REFs | PI: Chris, PO: Chris, TL: Seth, Others: Sujay, some of Sierra | 2022-04-20 | Yes | ||
| Ongoing data QC and pipeline maintenance | Ongoing data QC and pipeline maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
| Essential software maintenance | Essential software maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
| Remove some main roadblocks for GO-CAM models curation (Aim 2) | ||||||
| NEO load of new sequences | NEO load GH project | PI: Chris, PO: Pascale , TL:, Seth Others: Sujay | 2022-04-06 | Yes | Seth will look into a strategy - week of March 16th | |
| New visual editor (Tremayne) -> ready push to Noctua prod? | Visual Pathway editor GH project | PI: Paul, PO: Paul, TL:, Others: Tremayne | 2022-04-05 Close? | Yes | Ready for release to prod? Present at a future annotation call - or GOC meeting | |
| Model copy | PLANNED Old Shallow Model Copy GH project | PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne | 2022-04-05 - Review status | Yes | Aim to present at GOC meeting (or announce work is ongoing) | |
| Simple version of automation of Noctua updates | Noctua updates | PI: Chris, PO: TBD, TL: Seth, Others: | 2022-04-06 - Close? | Yes | ||
| Complete MOD imports (Aim 2) | ||||||
| MOD imports | MGI - WB - SGD | PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin | 2022-04-05 - MGI close? | No | ||
| Annotation Extension Relation Review | Annotation Extension Relation Review | PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale | TBD - after some projects are closed | |||
| Integrate YeastPathways in GO Cam | Yeast Pathways | PI: Paul, PO: , TL: Dustin, Others: | 2022-04-06 | No | ||
| Ontology (Aim 1) | ||||||
| Phylogenetic taxon constraints | TC GH project - ontology repo | PI: Paul, PO: Pascale, TL: Jim, Others: | 2022-04-20 | Yes | ||
| Outreach/usability (Aim 3) | ||||||
| Manage users more actively (+ all contributing groups, in particular those not attending GOC and annotation calls) | PI: Mike , PO: Suzi, TL:, Others: | 2022-04-xx before the GOC meeting | No | |||
| Noctua training material | Noctua training Project | PI: Mike , PO: Suzi, TL: NA, Others: David | 2022-04-20 | Yes | After/around the ZFIN training session | |
| Projects to prioritize | ||||||
| Switch to “species” for download outputs | PLANNED Improved Downloads ???? | PI: , PO:, TL:, Others: | 2022-03-23 - Review specs | No | ||
| Noctua output | GPAD output | PI: Chris, PO: Kimberly, TL:?, Others: Jim | 2022-04-20 - Review specs | |||
| Next Noctua tasks | ||||||
| Other projects | ||||||