Projects update meeting 2022-04-06
Attendees
- Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
- Present: David, Pascale, Seth, Suzi, Huaiyu,
- Regrets: Chris, Cynthia, Kimberly
Announcements
- Preparing GOC meeting: start planning the agenda: https://docs.google.com/document/d/1q1_OfUz-EZvw28WJhDnbuNUGFAZz-21-uynNybdJcqg/edit
- Fall meeting in Baltimore?
- Pascale off next week
Google drive move
- Google drive move
- Query owner:me in the 'LEGACY Gene Ontology -use Shared Drive' to make sure all files have been moved
- Looks like quite a few files are left https://drive.google.com/drive/search?q=parent:0B8kRPmmvPJU3dFhhcWhTSmlUcDA%20owner:
Project updates
Task Matrix
Completed projects?
- MGI import into Noctua
- AmiGO default relation GH project
- Noctua 2021 & Noctua 2020
- Visual Pathway editor - V1.0 deployed
- Simple version of Noctua updates
Project status
Ongoing data QC and pipeline maintenance
Anything to report? what resources are needed until the next release?
Alliance software support
Need to define PI, deliverables, resource
Ontology single BP jamboree this week
Monday - Thursday
Currently active projects
| Project name | Link to GH project | Resources: PI, PO, TL, Other resources | Next review | Follow up review | Aligned with Matrix? | Notes |
|---|---|---|---|---|---|---|
| Software improvement | ||||||
| Finalize AmiGO default relation change (Aim 3) | AmiGO default relation GH project | PI: Chris, PO:Chris, TL: Seth, Others: Seth | 2022-03-30 | Yes | To review and close after the next release. Webpage on relations need improvement (Chris, Pascale) | |
| Software improvements : GO API | GO API | PI: Chris, PO:??, TL: Seth, Others: Sierra | Review status 2022-04-20 | Yes | Will review at the end of April to see the status of the project | |
| Software improvements : pipeline cleanup | PLANNING Pipeline cleanup | PI: Chris, PO:??, TL: Seth, Others: Seth, Dustin, Sujay? | Review specs & scope 2022-04-20 | Yes | Planned for April | |
| Alliance software support | Alliance software support | PI: , PO:??, TL: Seth, Others: | 2022-03-23 | No | ||
| Noctua improvement and maintenance | Noctua 2021 & Noctua 2020 | PI: Paul , PO: Kimberly, TL: Seth, Others: Tremayne, Jim | 2022-03-23 | 2022-04-05 | No | |
| GO_REFs | GO_REFs | PI: Chris, PO: Chris, TL: Seth, Others: Sujay, some of Sierra | 2022-04-20 | Yes | ||
| Ongoing data QC and pipeline maintenance | Ongoing data QC and pipeline maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
| Essential software maintenance | Essential software maintenance | PI: Chris, PO:Pascale, TL: Seth, Others: Seth, Dustin, Sujay, Jim? | Ad hoc if there is a big bug | Yes | ||
| Remove some main roadblocks for GO-CAM models curation (Aim 2) | ||||||
| NEO load of new sequences | NEO load GH project | PI: Chris, PO: Pascale , TL:, Seth Others: Sujay | 2022-03-30 | Yes | Seth will look into a strategy - week of March 16th | |
| New visual editor (Tremayne) -> ready to push to Noctua dev? | Visual Pathway editor GH project | PI: Paul, PO: Paul, TL:, Others: Tremayne | 2022-03-23 | Yes | Ready for release to prod? Present at a future annotation call - or GOC meeting | |
| Model copy | PLANNED Old Shallow Model Copy GH project | PI: Paul, PO: Kimberly, TL: Jim, Others: Tremayne | 2022-03-30 - Review status | Yes | Aim to present at GOC meeting (or announce work is ongoing) | |
| Noctua output | GPAD output | PI: Chris, PO: Kimberly, TL:?, Others: Jim | 2022-03-30 - Review specs | +/- : Planned for March, but project not yet defined or resourced | David will split into 3 projects: (1) GPAD for MOD imports (done); (2) remove redundancy in exports (high priority); (3) problems with complicated models | |
| Simple version of automation of Noctua updates | Noctua updates | PI: Chris, PO: TBD, TL: Seth, Others: | 2022-03-30 - Review status | Yes | ||
| Complete MOD imports (Aim 2) | ||||||
| MOD imports | MGI - WB - SGD | PI: Chris, PO: Kimberly, TL: Seth, Others: David, Suzi, Dustin | 2022-03-23 | 2022-04-05 MGI done? | No | |
| Annotation Extension Relation Review | Annotation Extension Relation Review | PI: , PO: Kimberly, TL: , Others: David, Dustin, Pascale | TBD - after some projects are closed | |||
| Integrate YeastPathways in GO Cam | Yeast Pathways | PI: Paul, PO: , TL: Dustin, Others: | 2022-03-30 | No | ||
| Ontology (Aim 1) | ||||||
| Phylogenetic taxon constraints | TC GH project - ontology repo | PI: Paul, PO: Pascale, TL: Jim, Others: | 2022-04-20 | Yes | ||
| Outreach/usability (Aim 3) | ||||||
| Switch to “species” for download outputs | PLANNED Improved Downloads ???? | PI: , PO:, TL:, Others: | 2022-03-23 - Review specs | No | ||
| Manage users more actively (+ all contributing groups, in particular those not attending GOC and annotation calls) | PI: Mike , PO: Suzi, TL:, Others: | 2022-04-xx before the GOC meeting | No | |||
| Noctua training material | Noctua training Project | PI: Mike , PO: Suzi, TL: NA, Others: David | 2022-04-20 | Yes | After/around the ZFIN training session | |
| Other projects | ||||||