Projects update meeting 2022-04-20

Attendees

• Members: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Paul, Chris, Cynthia
• Present:
• Regrets:

Announcements

• Preparing GOC meeting: finalize the agenda: https://docs.google.com/document/d/1q1_OfUz-EZvw28WJhDnbuNUGFAZz-21-uynNybdJcqg/edit
• Fall meeting in Baltimore - either week of Oct. 10-14 or Oct. 17-21; is everyone available on these dates?

Project updates

Completed projects?

• AmiGO default relation GH project - still need to update http://geneontology.org/docs/ontology-relations/ DONE - Project closed
• Noctua 2021 (3 tickets left) - status:
• Visual Pathway editor v1.0 - status: on prod; need to finish documentation
• Simple version of Noctua updates - status:
• Increase number of annotable entities in Noctua / NEO - close ? 1 ticket still open

Task Matrix

Main tasks - Jan-July 2022 Needs updating for April

Google drive move

Seth, Suzi: status

Ongoing data QC and pipeline maintenance

• AspGD being taken off line- will now load from GOA:
  • either like the 'other' uniprot species, ie, only manual annotations
  • or could load the complete file from https://www.ebi.ac.uk/GOA/proteomes
• EXP Annotations by AspGD
  • (3434) Aspergillus nidulans FGSC A4
  • (981) Aspergillus fumigatus
  • (431) Aspergillus niger CBS 513.88
  • (354) Aspergillus oryzae RIB40

• status:

Noctua Training

• Training session with ZFIN curators, Thursday, April 14th (David, Kimberly)

Alliance software support

Need to define PI, deliverables, resource

Future topic/project

Seth

• What stats do we want to track, what do we need? Thinking grants, official reports, etc.
  • End-of-year summary stats for users, downloads?
  • Coming from consideration of log retention (policy) for some systems
  • This has been pretty ad hoc; do we want/need more structure with this?
  • Straw proposal: yearly roll of S3 logs, tooling to make extraction and use easier (need a policy of some kind)